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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13676812	T-C	HOMO	INTERGENIC
SBS	Chr1	26786895	A-T	HET	INTRON
SBS	Chr10	10241115	T-G	HET	INTERGENIC
SBS	Chr10	14070486	G-A	HET	INTERGENIC
SBS	Chr10	16607758	C-A	HET	INTERGENIC
SBS	Chr10	21054394	T-A	HET	INTERGENIC
SBS	Chr10	22490247	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g41790
SBS	Chr10	5513896	C-T	HET	INTERGENIC
SBS	Chr10	8029133	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g15250
SBS	Chr11	22004540	C-T	HET	INTRON
SBS	Chr12	11677324	G-C	HET	INTERGENIC
SBS	Chr12	24260938	G-A	HOMO	INTERGENIC
SBS	Chr12	24753030	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g40030
SBS	Chr2	11129866	G-A	HET	INTERGENIC
SBS	Chr2	19243629	C-T	HET	INTERGENIC
SBS	Chr3	5198481	C-G	HET	INTERGENIC
SBS	Chr4	17307068	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29190
SBS	Chr4	17307069	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29190
SBS	Chr4	34416251	A-C	HET	UTR_3_PRIME
SBS	Chr4	4226861	G-T	HET	INTERGENIC
SBS	Chr5	15379784	G-T	HET	INTRON
SBS	Chr5	15851552	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27260
SBS	Chr5	4136393	C-T	HET	UTR_3_PRIME
SBS	Chr6	28604747	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr7	13699195	A-T	HET	INTRON
SBS	Chr7	29382530	G-T	HOMO	INTERGENIC
SBS	Chr7	9825642	G-A	HET	INTRON
SBS	Chr8	11822539	G-C	HET	INTRON
SBS	Chr9	6188262	G-A	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1500688	1500690	2
Deletion	Chr9	6183264	6183283	19
Deletion	Chr6	7729098	7729112	14
Deletion	Chr8	8402614	8402634	20
Deletion	Chr9	9752001	10298000	546000	88
Deletion	Chr9	11253919	11263987	10068	2
Deletion	Chr1	13672222	13672228	6	LOC_Os01g24270
Deletion	Chr5	14209328	14209330	2
Deletion	Chr4	19759173	19759180	7
Deletion	Chr2	22583631	22583637	6
Deletion	Chr4	24743943	24743954	11
Deletion	Chr7	28819208	28819211	3
Deletion	Chr2	34269053	34269111	58
Deletion	Chr1	34908321	34908325	4
Deletion	Chr1	37769828	37769857	29	LOC_Os01g65070

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	22142323	22142324	2
Insertion	Chr12	2611697	2611700	4
Insertion	Chr2	19353409	19353410	2	LOC_Os02g32650
Insertion	Chr2	28634162	28634167	6
Insertion	Chr3	33021061	33021062	2
Insertion	Chr3	35430936	35430936	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	15454909	15705471	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	22899405	Chr1	26523017	LOC_Os01g46590

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