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| Mutant Information |
|---|
| Mutant Name | FN2242-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2242-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 57
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11338486 | C-G | HET | ||
| SBS | Chr1 | 12306453 | A-G | HET | ||
| SBS | Chr1 | 13702711 | C-G | HET | ||
| SBS | Chr1 | 1838931 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g04170 |
| SBS | Chr1 | 27019398 | G-A | HET | ||
| SBS | Chr1 | 40051859 | A-G | HET | ||
| SBS | Chr10 | 12832793 | A-G | Homo | ||
| SBS | Chr10 | 13545095 | G-T | HET | ||
| SBS | Chr10 | 6925942 | G-A | HET | ||
| SBS | Chr10 | 8312635 | C-A | HET | ||
| SBS | Chr11 | 11449200 | A-T | HET | ||
| SBS | Chr11 | 11868395 | C-T | HET | ||
| SBS | Chr11 | 16952817 | G-T | HET | ||
| SBS | Chr11 | 18125558 | A-T | HET | ||
| SBS | Chr11 | 27018150 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g44680 |
| SBS | Chr11 | 4521031 | G-T | HET | ||
| SBS | Chr11 | 7885327 | C-A | HET | ||
| SBS | Chr11 | 8344670 | G-A | HET | ||
| SBS | Chr11 | 9282248 | C-T | Homo | ||
| SBS | Chr12 | 10109022 | G-A | Homo | ||
| SBS | Chr12 | 12267167 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g21789 |
| SBS | Chr12 | 12373524 | T-A | Homo | ||
| SBS | Chr12 | 14515445 | G-A | HET | ||
| SBS | Chr12 | 1873616 | C-T | HET | ||
| SBS | Chr12 | 21713460 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g35710 |
| SBS | Chr12 | 24466973 | T-C | Homo | ||
| SBS | Chr12 | 25934369 | C-A | Homo | ||
| SBS | Chr12 | 8305684 | G-C | HET | ||
| SBS | Chr2 | 10402802 | T-A | HET | ||
| SBS | Chr2 | 11322160 | A-G | HET | ||
| SBS | Chr2 | 9229310 | C-T | HET | ||
| SBS | Chr3 | 14114749 | T-C | Homo | ||
| SBS | Chr3 | 23313027 | G-C | HET | ||
| SBS | Chr3 | 4376708 | T-C | HET | ||
| SBS | Chr4 | 12251344 | A-T | HET | ||
| SBS | Chr4 | 16908047 | C-T | HET | ||
| SBS | Chr4 | 1944452 | T-C | HET | ||
| SBS | Chr4 | 22860739 | C-G | HET | ||
| SBS | Chr4 | 27556720 | C-T | HET | ||
| SBS | Chr5 | 18675496 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g32050 |
| SBS | Chr5 | 28428283 | C-T | HET | ||
| SBS | Chr5 | 997440 | T-A | HET | ||
| SBS | Chr6 | 30943597 | A-T | HET | ||
| SBS | Chr7 | 10918743 | C-T | HET | ||
| SBS | Chr7 | 11345905 | A-G | HET | ||
| SBS | Chr7 | 209735 | C-T | HET | ||
| SBS | Chr8 | 10991283 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g17910 |
| SBS | Chr8 | 15337413 | G-T | HET | ||
| SBS | Chr8 | 16371478 | C-G | HET | ||
| SBS | Chr8 | 4407525 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g07850 |
| SBS | Chr8 | 5051003 | C-T | HET | ||
| SBS | Chr8 | 7812418 | G-T | Homo | ||
| SBS | Chr9 | 15294118 | G-A | HET | ||
| SBS | Chr9 | 17510986 | G-A | HET | ||
| SBS | Chr9 | 4154020 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g08050 |
| SBS | Chr9 | 4802917 | C-A | HET | ||
| SBS | Chr9 | 939122 | A-G | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 8466096 | 8466103 | 7 | |
| Deletion | Chr5 | 10170268 | 10170271 | 3 | |
| Deletion | Chr7 | 12229807 | 12229808 | 1 | |
| Deletion | Chr12 | 12396903 | 12396908 | 5 | |
| Deletion | Chr2 | 21891001 | 21902000 | 10999 | LOC_Os02g36264 |
| Deletion | Chr10 | 22788256 | 22788259 | 3 | |
| Deletion | Chr12 | 25877125 | 25877142 | 17 | |
| Deletion | Chr2 | 31568297 | 31568298 | 1 | |
| Deletion | Chr2 | 31568513 | 31568514 | 1 | LOC_Os02g51540 |
| Deletion | Chr2 | 32668517 | 32668518 | 1 | LOC_Os02g53370 |
| Deletion | Chr3 | 32733449 | 32733451 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 16408623 | 16408684 | 62 | |
| Insertion | Chr9 | 18654061 | 18654061 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 21791543 | 21891114 | 2 |
| Inversion | Chr2 | 21791562 | 21902213 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 2592228 | Chr7 | 27101172 | 2 |
| Translocation | Chr9 | 6127684 | Chr5 | 754968 | 2 |
| Translocation | Chr8 | 14392177 | Chr3 | 34408254 | 2 |
| Translocation | Chr11 | 16973826 | Chr1 | 8708829 | LOC_Os11g29274 |
| Translocation | Chr11 | 17315189 | Chr7 | 8152573 | |
| Translocation | Chr6 | 22658470 | Chr1 | 299895 | LOC_Os06g38294 |
| Translocation | Chr12 | 27106990 | Chr3 | 26160657 |