Search Results
| Mutant Information |
|---|
| Mutant Name | FN2244-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2244-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2956370 | G-A | Homo | ||
| SBS | Chr1 | 12056529 | C-T | HET | ||
| SBS | Chr1 | 13020208 | C-T | HET | STOP_GAINED | LOC_Os01g23160 |
| SBS | Chr1 | 19838923 | A-T | HET | ||
| SBS | Chr1 | 28337541 | C-T | HET | ||
| SBS | Chr1 | 30368164 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g52780 |
| SBS | Chr2 | 4831052 | T-A | HET | ||
| SBS | Chr2 | 18890074 | T-C | Homo | ||
| SBS | Chr2 | 25340155 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g42134 |
| SBS | Chr4 | 10693686 | G-A | HET | ||
| SBS | Chr4 | 13684876 | T-C | HET | ||
| SBS | Chr4 | 20370198 | C-T | HET | ||
| SBS | Chr4 | 23012428 | G-A | HET | ||
| SBS | Chr6 | 234206 | C-G | Homo | ||
| SBS | Chr6 | 9273761 | C-T | HET | ||
| SBS | Chr6 | 23610985 | G-T | Homo | ||
| SBS | Chr6 | 31065061 | A-T | HET | ||
| SBS | Chr7 | 8716231 | A-G | Homo | ||
| SBS | Chr7 | 28706966 | T-A | HET | ||
| SBS | Chr8 | 6494949 | A-T | HET | ||
| SBS | Chr9 | 8330241 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14070 |
| SBS | Chr9 | 11403039 | G-A | Homo | ||
| SBS | Chr10 | 18997864 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g35510 |
| SBS | Chr11 | 7038261 | C-G | Homo | ||
| SBS | Chr11 | 17117615 | C-T | HET | ||
| SBS | Chr11 | 17532345 | C-T | HET | ||
| SBS | Chr11 | 20739919 | A-T | HET | ||
| SBS | Chr12 | 11613192 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g19930 |
| SBS | Chr12 | 16522070 | C-T | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1176863 | 1176874 | 11 | LOC_Os07g03090 |
| Deletion | Chr8 | 5468177 | 5468178 | 1 | LOC_Os08g09430 |
| Deletion | Chr7 | 6888791 | 6888796 | 5 | LOC_Os07g12260 |
| Deletion | Chr2 | 9810857 | 9810860 | 3 | |
| Deletion | Chr5 | 13478576 | 13478583 | 7 | |
| Deletion | Chr6 | 15252882 | 15252883 | 1 | |
| Deletion | Chr9 | 19696617 | 19696618 | 1 | |
| Deletion | Chr9 | 19700851 | 19700856 | 5 | |
| Deletion | Chr12 | 21154177 | 21154183 | 6 | |
| Deletion | Chr6 | 24537399 | 24537400 | 1 | |
| Deletion | Chr12 | 26742975 | 26742979 | 4 | |
| Deletion | Chr1 | 30474364 | 30474371 | 7 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 29103569 | 29103575 | 7 | |
| Insertion | Chr1 | 1918329 | 1918329 | 1 | |
| Insertion | Chr2 | 7040501 | 7040501 | 1 | LOC_Os02g13210 |
| Insertion | Chr8 | 17446884 | 17446884 | 1 | |
| Insertion | Chr9 | 14291608 | 14291608 | 1 | |
| Insertion | Chr11 | 22105273 | 22105273 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 9793203 | 9872621 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 688759 | Chr9 | 16008988 | |
| Translocation | Chr11 | 4910767 | Chr8 | 24407377 | |
| Translocation | Chr10 | 5127069 | Chr3 | 13468777 | 2 |
| Translocation | Chr9 | 9793208 | Chr4 | 19316816 | |
| Translocation | Chr11 | 18423266 | Chr4 | 32887353 |