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Mutant Information

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20468571	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g36790
SBS	Chr1	29626802	C-T	HET
SBS	Chr1	37563537	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g64740
SBS	Chr1	8021990	T-A	HET
SBS	Chr10	18014715	A-G	HET
SBS	Chr11	2934233	A-T	HET
SBS	Chr11	6196289	C-T	Homo
SBS	Chr2	15115358	G-A	HET
SBS	Chr2	15285322	G-A	HET
SBS	Chr2	16268770	T-C	HET
SBS	Chr3	34489017	A-G	Homo
SBS	Chr3	36297084	T-A	Homo
SBS	Chr4	14354850	T-C	Homo
SBS	Chr4	8993254	C-T	HET
SBS	Chr5	10013203	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17440
SBS	Chr5	22193010	G-A	HET
SBS	Chr5	9794579	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17120
SBS	Chr6	7012660	C-A	HET
SBS	Chr9	18185860	C-T	Homo
SBS	Chr9	9236679	G-C	Homo

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	913997	914006	9
Deletion	Chr11	3517001	3676000	158999	24
Deletion	Chr1	4187174	4187175	1
Deletion	Chr1	9393001	9410000	16999	2
Deletion	Chr6	10570623	10570624	1
Deletion	Chr5	14313685	14313691	6
Deletion	Chr12	16658378	16658380	2
Deletion	Chr8	17051321	17051324	3
Deletion	Chr7	18697345	18697346	1
Deletion	Chr2	21516001	21600000	83999	13

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	5091446	5091446	1	LOC_Os10g09440
Insertion	Chr12	11626172	11626178	7
Insertion	Chr4	11973142	11973142	1
Insertion	Chr4	15002505	15002505	1
Insertion	Chr4	2610506	2610506	1
Insertion	Chr7	14901434	14901434	1
Insertion	Chr8	24612150	24612150	1

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2319004	Chr2	16818244	LOC_Os09g04380
Translocation	Chr5	3964561	Chr3	25794543
Translocation	Chr12	5460920	Chr4	15519175
Translocation	Chr12	11756785	Chr10	11855553	LOC_Os12g20169
Translocation	Chr2	15841487	Chr1	39351895
Translocation	Chr3	24883358	Chr2	8851190	2
Translocation	Chr4	32799874	Chr1	27526794

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