Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN2246-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2246-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18882631 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g34250 |
| SBS | Chr1 | 21432148 | G-A | HET | ||
| SBS | Chr1 | 24288864 | G-A | HET | ||
| SBS | Chr1 | 36308186 | G-T | HET | ||
| SBS | Chr1 | 36308187 | T-G | HET | ||
| SBS | Chr1 | 40376846 | G-A | HET | ||
| SBS | Chr10 | 6425045 | C-T | Homo | ||
| SBS | Chr11 | 14183016 | G-A | Homo | ||
| SBS | Chr12 | 14512807 | G-A | Homo | ||
| SBS | Chr2 | 25122646 | C-G | HET | ||
| SBS | Chr2 | 25957911 | A-T | HET | ||
| SBS | Chr3 | 11200373 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g19920 |
| SBS | Chr3 | 11200374 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g19920 |
| SBS | Chr3 | 11200375 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g19920 |
| SBS | Chr3 | 12826091 | T-C | Homo | ||
| SBS | Chr3 | 26360435 | T-C | Homo | ||
| SBS | Chr3 | 28359173 | T-A | HET | ||
| SBS | Chr3 | 9425032 | C-T | Homo | ||
| SBS | Chr3 | 9425033 | C-A | Homo | ||
| SBS | Chr4 | 32228610 | A-C | HET | ||
| SBS | Chr4 | 6746940 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g12230 |
| SBS | Chr5 | 15327892 | G-T | HET | ||
| SBS | Chr5 | 22929216 | T-A | HET | ||
| SBS | Chr6 | 27791989 | G-A | Homo | ||
| SBS | Chr6 | 8405974 | A-T | Homo | ||
| SBS | Chr6 | 9177924 | C-G | Homo | ||
| SBS | Chr7 | 11419413 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g19290 |
| SBS | Chr7 | 9144583 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g15760 |
| SBS | Chr7 | 9270528 | C-A | Homo | ||
| SBS | Chr8 | 10519098 | C-T | Homo | ||
| SBS | Chr8 | 1832650 | G-A | Homo | ||
| SBS | Chr8 | 20838311 | T-C | HET | ||
| SBS | Chr9 | 16229206 | T-C | Homo | ||
| SBS | Chr9 | 3027665 | C-T | HET | ||
| SBS | Chr9 | 3027668 | C-T | HET | ||
| SBS | Chr9 | 3848765 | G-T | HET | ||
| SBS | Chr9 | 8777673 | A-G | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 66930 | 66935 | 5 | |
| Deletion | Chr7 | 5198714 | 5198723 | 9 | LOC_Os07g09760 |
| Deletion | Chr9 | 8894001 | 8894024 | 23 | |
| Deletion | Chr11 | 11501358 | 11501359 | 1 | |
| Deletion | Chr7 | 13701515 | 13701537 | 22 | |
| Deletion | Chr6 | 14393850 | 14393852 | 2 | |
| Deletion | Chr10 | 18114157 | 18114183 | 26 | |
| Deletion | Chr7 | 23743228 | 23743235 | 7 | |
| Deletion | Chr7 | 29009613 | 29009629 | 16 | LOC_Os07g48500 |
| Deletion | Chr2 | 29296193 | 29296202 | 9 | LOC_Os02g47890 |
| Deletion | Chr3 | 30923709 | 30923839 | 130 | |
| Deletion | Chr1 | 40108533 | 40108543 | 10 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 12153925 | 12153925 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 13472603 | 13516053 | 2 |
| Inversion | Chr12 | 13472998 | 13516059 | 2 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2544258 | Chr8 | 6320164 | 2 |
| Translocation | Chr12 | 13472621 | Chr10 | 8499633 | 2 |
| Translocation | Chr12 | 13472985 | Chr1 | 34746215 | |
| Translocation | Chr4 | 13911798 | Chr1 | 18784309 | |
| Translocation | Chr12 | 18054781 | Chr6 | 9106309 | |
| Translocation | Chr12 | 18078770 | Chr6 | 9106294 | |
| Translocation | Chr12 | 18079654 | Chr1 | 34746241 | |
| Translocation | Chr12 | 18086963 | Chr10 | 8509364 | 2 |
| Translocation | Chr11 | 22689898 | Chr3 | 11914698 | |
| Translocation | Chr3 | 33803753 | Chr2 | 5772739 |