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| Mutant Information |
|---|
| Mutant Name | FN2247-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2247-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 11736968 | C-T | HET | ||
| SBS | Chr10 | 12146881 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g23270 |
| SBS | Chr10 | 15913666 | T-C | HET | ||
| SBS | Chr10 | 20971615 | G-A | Homo | ||
| SBS | Chr10 | 6945864 | C-G | HET | ||
| SBS | Chr11 | 20077568 | G-A | HET | ||
| SBS | Chr11 | 25345624 | A-G | Homo | ||
| SBS | Chr12 | 24644485 | A-G | HET | ||
| SBS | Chr2 | 12681443 | G-A | Homo | ||
| SBS | Chr2 | 21299433 | A-C | HET | ||
| SBS | Chr2 | 26861745 | T-C | Homo | ||
| SBS | Chr2 | 5539604 | A-G | HET | ||
| SBS | Chr4 | 19651122 | C-A | Homo | ||
| SBS | Chr4 | 21394715 | A-C | HET | ||
| SBS | Chr4 | 28309552 | G-T | HET | ||
| SBS | Chr5 | 10229119 | T-C | HET | ||
| SBS | Chr5 | 14347516 | T-C | HET | ||
| SBS | Chr5 | 22789785 | C-G | HET | ||
| SBS | Chr5 | 26767344 | C-T | HET | ||
| SBS | Chr5 | 29786435 | C-T | HET | ||
| SBS | Chr5 | 6505002 | C-T | HET | ||
| SBS | Chr5 | 8238174 | T-C | HET | ||
| SBS | Chr6 | 13150890 | C-T | HET | ||
| SBS | Chr6 | 26410406 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g43850 |
| SBS | Chr6 | 26410407 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g43850 |
| SBS | Chr7 | 11279068 | A-G | HET | ||
| SBS | Chr7 | 14603483 | A-T | HET | ||
| SBS | Chr7 | 1862102 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g04240 |
| SBS | Chr7 | 8840919 | G-A | HET | ||
| SBS | Chr9 | 12721451 | C-T | HET | ||
| SBS | Chr9 | 15572200 | G-A | Homo | ||
| SBS | Chr9 | 18326956 | G-A | HET | ||
| SBS | Chr9 | 18438326 | C-T | Homo | ||
| SBS | Chr9 | 18438327 | C-T | Homo |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 5417750 | 5417772 | 22 | |
| Deletion | Chr3 | 12258392 | 12258393 | 1 | |
| Deletion | Chr6 | 16347331 | 16347332 | 1 | |
| Deletion | Chr9 | 19151954 | 19151973 | 19 | |
| Deletion | Chr3 | 25221414 | 25221422 | 8 | LOC_Os03g44740 |
| Deletion | Chr8 | 27775001 | 27799000 | 23999 | 4 |
| Deletion | Chr4 | 27963533 | 27963546 | 13 | |
| Deletion | Chr6 | 28600356 | 28600368 | 12 |
Insertions: 6
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 2738998 | 2843279 | LOC_Os12g05940 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 1548296 | Chr10 | 5655821 | 2 |
| Translocation | Chr10 | 5654208 | Chr5 | 27078119 | |
| Translocation | Chr12 | 18641673 | Chr11 | 14248110 | |
| Translocation | Chr4 | 23938474 | Chr3 | 5772805 |