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| Mutant Information |
|---|
| Mutant Name | FN2251-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2251-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21506511 | G-C | HET | ||
| SBS | Chr1 | 35679995 | T-C | HET | ||
| SBS | Chr1 | 39427013 | A-T | HET | ||
| SBS | Chr10 | 15019830 | G-C | Homo | ||
| SBS | Chr10 | 2990882 | G-T | HET | ||
| SBS | Chr10 | 305812 | A-C | HET | ||
| SBS | Chr11 | 3099524 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g06420 |
| SBS | Chr11 | 3099525 | C-A | Homo | ||
| SBS | Chr11 | 3899003 | C-T | Homo | ||
| SBS | Chr3 | 13009164 | A-T | HET | ||
| SBS | Chr3 | 35029639 | A-T | HET | ||
| SBS | Chr4 | 13699147 | C-G | HET | ||
| SBS | Chr4 | 34982741 | G-A | HET | ||
| SBS | Chr4 | 6776619 | C-T | Homo | ||
| SBS | Chr5 | 12356827 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g21000 |
| SBS | Chr5 | 14895344 | C-T | Homo | ||
| SBS | Chr5 | 19713958 | C-A | Homo | ||
| SBS | Chr5 | 27485944 | A-T | Homo | ||
| SBS | Chr5 | 29575912 | C-A | HET | ||
| SBS | Chr6 | 17303660 | T-A | HET | ||
| SBS | Chr7 | 11790276 | C-T | HET | ||
| SBS | Chr7 | 14177037 | G-A | HET | ||
| SBS | Chr7 | 18573109 | A-T | HET | ||
| SBS | Chr7 | 27476000 | A-G | Homo | ||
| SBS | Chr9 | 22704889 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g39550 |
| SBS | Chr9 | 8391407 | G-T | HET | ||
| SBS | Chr9 | 8391408 | C-T | HET |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 8738583 | 8738585 | 2 | LOC_Os03g15840 |
| Deletion | Chr7 | 11798568 | 11798569 | 1 | LOC_Os07g20430 |
| Deletion | Chr5 | 15233454 | 15233455 | 1 | |
| Deletion | Chr6 | 15437108 | 15437262 | 154 | |
| Deletion | Chr7 | 24388627 | 24388641 | 14 | |
| Deletion | Chr3 | 29472662 | 29472665 | 3 |
Insertions: 5
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 7117189 | 7140450 | 2 |
| Inversion | Chr10 | 7117203 | 7140451 | 2 |
| Inversion | Chr3 | 32801527 | 33144903 | 2 |
| Inversion | Chr3 | 32801529 | 33144908 | 2 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 8097563 | Chr1 | 16931747 | |
| Translocation | Chr8 | 9987880 | Chr7 | 8235911 | LOC_Os08g16370 |
| Translocation | Chr3 | 14688288 | Chr1 | 3006901 | |
| Translocation | Chr8 | 16788590 | Chr2 | 14478920 | |
| Translocation | Chr8 | 20135658 | Chr1 | 2999831 | 2 |
| Translocation | Chr6 | 21854103 | Chr4 | 31488608 | |
| Translocation | Chr3 | 24678380 | Chr2 | 9608628 | |
| Translocation | Chr11 | 28679397 | Chr8 | 20028763 |