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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15252795	T-C	HET
SBS	Chr1	15693694	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g28050
SBS	Chr1	41336848	A-G	Homo
SBS	Chr1	9594991	G-T	Homo
SBS	Chr10	13397231	C-A	HET
SBS	Chr11	20932644	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g35700
SBS	Chr11	7969083	G-A	HET
SBS	Chr12	10597659	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18350
SBS	Chr12	1630552	T-C	Homo
SBS	Chr2	15166624	T-A	HET
SBS	Chr2	19235694	C-A	HET
SBS	Chr2	22676583	G-A	Homo
SBS	Chr3	26740010	T-C	Homo
SBS	Chr3	34063011	G-T	Homo
SBS	Chr4	10439580	C-G	HET
SBS	Chr4	1218277	T-C	HET
SBS	Chr4	1623788	C-T	HET
SBS	Chr5	10528712	C-T	HET
SBS	Chr5	21635611	C-T	HET
SBS	Chr5	9569402	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16800
SBS	Chr6	11659515	C-A	Homo
SBS	Chr6	18107602	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g31170
SBS	Chr6	25707925	C-A	HET
SBS	Chr6	8472299	C-T	Homo
SBS	Chr7	16312606	T-C	Homo
SBS	Chr7	23832777	A-T	HET
SBS	Chr8	13591548	C-T	Homo
SBS	Chr8	1390380	G-A	Homo
SBS	Chr8	23770147	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g37530
SBS	Chr9	14524612	C-A	HET
SBS	Chr9	1623124	G-T	HET
SBS	Chr9	17796114	A-T	HET
SBS	Chr9	3298368	T-C	Homo

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	835755	835771	16	LOC_Os04g02354
Deletion	Chr3	3983477	3983479	2
Deletion	Chr11	4361404	4361406	2
Deletion	Chr10	10735001	10760000	24999	2
Deletion	Chr8	16317758	16317760	2
Deletion	Chr8	19676430	19676433	3	LOC_Os08g31750
Deletion	Chr8	23946001	23989000	42999	8
Deletion	Chr2	26557829	26557839	10
Deletion	Chr2	27612437	27612461	24
Deletion	Chr4	29212795	29212797	2
Deletion	Chr1	39314685	39314690	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	218625	218626	2
Insertion	Chr1	5369281	5369282	2
Insertion	Chr8	13642396	13642396	1	LOC_Os08g22680
Insertion	Chr9	20367442	20367443	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	14449240	14518624	2
Inversion	Chr2	14479748	14737756
Inversion	Chr2	14621922	14737772

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	141710	Chr7	6598081
Translocation	Chr8	1477576	Chr1	21232613	2
Translocation	Chr8	1477588	Chr1	21232238	2
Translocation	Chr4	7546423	Chr1	2551472	2
Translocation	Chr11	7937068	Chr1	12031304
Translocation	Chr8	10644438	Chr1	21232236	2
Translocation	Chr8	10644446	Chr1	21231133	2
Translocation	Chr8	21842704	Chr1	21153125	2
Translocation	Chr8	21842794	Chr1	21151785	2
Translocation	Chr8	23988473	Chr2	14479751	LOC_Os08g37874
Translocation	Chr12	27085377	Chr11	18154426
Translocation	Chr11	29009953	Chr3	31102197

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