Search Results
| Mutant Information |
|---|
| Mutant Name | FN2258-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2258-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 18
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 1109098 | A-T | Homo | ||
| SBS | Chr2 | 1109099 | A-T | Homo | ||
| SBS | Chr2 | 16881076 | C-T | HET | ||
| SBS | Chr4 | 27247797 | C-T | HET | ||
| SBS | Chr5 | 3016990 | G-A | Homo | ||
| SBS | Chr5 | 12917430 | C-G | Homo | ||
| SBS | Chr5 | 20395595 | G-A | HET | ||
| SBS | Chr6 | 5743149 | G-A | HET | ||
| SBS | Chr6 | 28143594 | A-G | Homo | ||
| SBS | Chr7 | 13568 | G-T | HET | ||
| SBS | Chr7 | 26760017 | G-A | HET | ||
| SBS | Chr9 | 2596677 | T-G | HET | ||
| SBS | Chr9 | 11113466 | A-T | HET | ||
| SBS | Chr10 | 1476532 | T-C | Homo | ||
| SBS | Chr11 | 154221 | C-T | HET | ||
| SBS | Chr11 | 154223 | G-T | HET | ||
| SBS | Chr11 | 3356616 | A-T | HET | ||
| SBS | Chr12 | 4673325 | A-T | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 257001 | 300000 | 42999 | 8 |
| Deletion | Chr10 | 12553024 | 12553025 | 1 | LOC_Os10g24460 |
| Deletion | Chr12 | 19311326 | 19311335 | 9 | |
| Deletion | Chr8 | 20613849 | 20613941 | 92 | |
| Deletion | Chr12 | 23759048 | 23759049 | 1 | |
| Deletion | Chr4 | 33294686 | 33294699 | 13 | |
| Deletion | Chr1 | 38282001 | 38317000 | 34999 | 8 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 30302637 | 30302638 | 2 | |
| Insertion | Chr4 | 3332188 | 3332188 | 1 | |
| Insertion | Chr4 | 33911351 | 33911351 | 1 | |
| Insertion | Chr4 | 35487006 | 35487007 | 2 | |
| Insertion | Chr10 | 568534 | 568566 | 33 | |
| Insertion | Chr10 | 5746056 | 5746056 | 1 | |
| Insertion | Chr12 | 15228442 | 15228455 | 14 | LOC_Os12g26140 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 3794186 | 4234643 | 2 |
| Inversion | Chr7 | 18888965 | 18889508 | |
| Inversion | Chr3 | 22179239 | 22587979 | |
| Inversion | Chr3 | 22179248 | 22587981 | |
| Inversion | Chr5 | 27925412 | 27986418 | LOC_Os05g48720 |
| Inversion | Chr5 | 27925421 | 27986429 | LOC_Os05g48720 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 10913923 | Chr5 | 9160328 | |
| Translocation | Chr10 | 12429129 | Chr8 | 11339333 | |
| Translocation | Chr9 | 15071963 | Chr4 | 11228789 | |
| Translocation | Chr7 | 22455724 | Chr5 | 7557104 | |
| Translocation | Chr11 | 22709078 | Chr2 | 18255031 | 2 |