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| Mutant Information |
|---|
| Mutant Name | FN2264-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2264-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11191316 | G-A | Homo | ||
| SBS | Chr1 | 35030508 | G-A | Homo | ||
| SBS | Chr1 | 39799068 | C-A | HET | ||
| SBS | Chr1 | 9612365 | T-A | Homo | ||
| SBS | Chr1 | 9612366 | C-A | Homo | ||
| SBS | Chr10 | 12290246 | C-T | HET | ||
| SBS | Chr11 | 25005325 | C-T | HET | ||
| SBS | Chr2 | 14478984 | T-C | Homo | ||
| SBS | Chr2 | 35734030 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g58430 |
| SBS | Chr3 | 36204771 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g64070 |
| SBS | Chr4 | 34863995 | T-G | HET | ||
| SBS | Chr4 | 8681774 | A-G | Homo | ||
| SBS | Chr5 | 23376295 | C-T | Homo | ||
| SBS | Chr5 | 24525602 | C-T | HET | ||
| SBS | Chr5 | 2953001 | A-T | HET | ||
| SBS | Chr5 | 4896989 | A-T | HET | ||
| SBS | Chr7 | 9773420 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g16650 |
| SBS | Chr9 | 12767895 | T-C | HET | ||
| SBS | Chr9 | 14633705 | C-T | Homo | ||
| SBS | Chr9 | 1772186 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g03590 |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 728595 | 728604 | 9 | |
| Deletion | Chr7 | 5134967 | 5134971 | 4 | |
| Deletion | Chr10 | 7209709 | 7209769 | 60 | LOC_Os10g13350 |
| Deletion | Chr5 | 16128616 | 16128618 | 2 | |
| Deletion | Chr12 | 20240099 | 20240100 | 1 | |
| Deletion | Chr12 | 20439623 | 20439624 | 1 | |
| Deletion | Chr8 | 20622427 | 20622429 | 2 | LOC_Os08g33154 |
| Deletion | Chr12 | 22841599 | 22841600 | 1 | |
| Deletion | Chr4 | 26785184 | 26785210 | 26 | |
| Deletion | Chr6 | 29437001 | 29514000 | 76999 | 12 |
| Deletion | Chr6 | 30554001 | 30566000 | 11999 | 3 |
Insertions: 7
No Inversion
Translocations: 12
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 986545 | Chr1 | 19784917 | 2 |
| Translocation | Chr8 | 2594424 | Chr1 | 17033541 | |
| Translocation | Chr12 | 5426745 | Chr6 | 14068129 | |
| Translocation | Chr5 | 6134996 | Chr3 | 22229001 | LOC_Os05g10980 |
| Translocation | Chr9 | 6282513 | Chr4 | 5870526 | |
| Translocation | Chr9 | 6720401 | Chr5 | 16713321 | |
| Translocation | Chr10 | 7833402 | Chr9 | 2382364 | 2 |
| Translocation | Chr8 | 12013952 | Chr3 | 23147208 | 2 |
| Translocation | Chr6 | 12598590 | Chr4 | 3152650 | 2 |
| Translocation | Chr10 | 12733247 | Chr9 | 759195 | 2 |
| Translocation | Chr7 | 21018905 | Chr2 | 19933319 | LOC_Os07g35090 |
| Translocation | Chr11 | 22094146 | Chr8 | 7405061 |