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| Mutant Information |
|---|
| Mutant Name | FN2269-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2269-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26153959 | A-G | HET | ||
| SBS | Chr1 | 27662459 | A-G | HET | ||
| SBS | Chr10 | 16650932 | A-T | Homo | ||
| SBS | Chr10 | 22626796 | G-A | HET | ||
| SBS | Chr10 | 2858134 | C-G | Homo | ||
| SBS | Chr10 | 3834190 | T-C | Homo | ||
| SBS | Chr11 | 11067949 | C-A | Homo | ||
| SBS | Chr11 | 284249 | T-A | HET | ||
| SBS | Chr11 | 7120325 | G-T | Homo | ||
| SBS | Chr12 | 4091595 | G-T | Homo | ||
| SBS | Chr2 | 307384 | C-T | HET | ||
| SBS | Chr2 | 3840735 | G-A | HET | ||
| SBS | Chr3 | 17514641 | A-G | HET | ||
| SBS | Chr3 | 32908155 | A-T | Homo | ||
| SBS | Chr3 | 8426811 | C-A | Homo | ||
| SBS | Chr4 | 13790236 | T-C | HET | ||
| SBS | Chr4 | 18753638 | A-G | Homo | ||
| SBS | Chr4 | 21488426 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g35330 |
| SBS | Chr4 | 22204788 | G-A | HET | ||
| SBS | Chr4 | 24624147 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g41510 |
| SBS | Chr4 | 6761469 | C-T | HET | ||
| SBS | Chr5 | 22465172 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g38320 |
| SBS | Chr5 | 29857625 | A-C | HET | ||
| SBS | Chr6 | 10146362 | C-T | Homo | ||
| SBS | Chr6 | 9919032 | C-T | HET | ||
| SBS | Chr7 | 17441776 | C-T | HET | ||
| SBS | Chr7 | 17593768 | G-C | HET | ||
| SBS | Chr7 | 24147330 | C-A | HET | ||
| SBS | Chr7 | 25786165 | A-G | Homo | ||
| SBS | Chr7 | 6368225 | C-G | HET | ||
| SBS | Chr9 | 20203684 | T-A | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 103001 | 127000 | 23999 | 6 |
| Deletion | Chr9 | 204039 | 204052 | 13 | |
| Deletion | Chr3 | 1465293 | 1465294 | 1 | |
| Deletion | Chr2 | 2962001 | 3003000 | 40999 | 7 |
| Deletion | Chr5 | 4157140 | 4157150 | 10 | |
| Deletion | Chr8 | 4416864 | 4416865 | 1 | LOC_Os08g07850 |
| Deletion | Chr7 | 4926415 | 4926423 | 8 | |
| Deletion | Chr6 | 4971626 | 4971630 | 4 | |
| Deletion | Chr12 | 6562292 | 6562301 | 9 | |
| Deletion | Chr12 | 9295001 | 9306000 | 10999 | 2 |
| Deletion | Chr1 | 9406041 | 9406051 | 10 | |
| Deletion | Chr2 | 10074660 | 10074661 | 1 | |
| Deletion | Chr12 | 10644308 | 10644320 | 12 | LOC_Os12g18400 |
| Deletion | Chr7 | 15228027 | 15228034 | 7 | |
| Deletion | Chr5 | 18792600 | 18792601 | 1 | |
| Deletion | Chr3 | 20689868 | 20689878 | 10 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 25683696 | 25683696 | 1 | |
| Insertion | Chr2 | 23821572 | 23821572 | 1 | LOC_Os02g39480 |
| Insertion | Chr2 | 26793248 | 26793265 | 18 | |
| Insertion | Chr6 | 10986230 | 10986230 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 104132 | 127587 | |
| Inversion | Chr6 | 174622 | 286265 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4034 | Chr1 | 43269899 | |
| Translocation | Chr5 | 1851232 | Chr4 | 1112220 | 2 |
| Translocation | Chr6 | 15614695 | Chr3 | 13987599 | 2 |
| Translocation | Chr12 | 16335336 | Chr7 | 3932780 | 2 |
| Translocation | Chr4 | 17124343 | Chr1 | 42077153 | LOC_Os04g28890 |
| Translocation | Chr4 | 17124407 | Chr1 | 42077307 | LOC_Os04g28890 |
| Translocation | Chr12 | 21494619 | Chr11 | 17511558 | LOC_Os12g35360 |