Search Results
| Mutant Information |
|---|
| Mutant Name | FN2271-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2271-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18482423 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g33580 |
| SBS | Chr1 | 23187531 | T-G | HET | ||
| SBS | Chr1 | 23187533 | G-A | HET | ||
| SBS | Chr1 | 24869766 | T-C | HET | ||
| SBS | Chr1 | 29086033 | G-A | HET | ||
| SBS | Chr2 | 16345338 | G-T | HET | ||
| SBS | Chr2 | 28742544 | C-T | HET | ||
| SBS | Chr2 | 30099548 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g49240 |
| SBS | Chr3 | 4945388 | C-T | Homo | ||
| SBS | Chr3 | 9890001 | C-T | HET | ||
| SBS | Chr3 | 17541019 | A-G | Homo | ||
| SBS | Chr3 | 26404887 | A-G | HET | ||
| SBS | Chr3 | 28851151 | C-T | HET | ||
| SBS | Chr4 | 7793700 | G-A | Homo | ||
| SBS | Chr4 | 22577600 | C-T | HET | ||
| SBS | Chr4 | 24344985 | C-T | HET | ||
| SBS | Chr4 | 26420247 | C-T | HET | ||
| SBS | Chr4 | 30121202 | T-A | HET | ||
| SBS | Chr4 | 33191110 | A-G | HET | ||
| SBS | Chr4 | 35253106 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g59280 |
| SBS | Chr5 | 10568360 | A-T | HET | ||
| SBS | Chr5 | 14013242 | G-T | HET | ||
| SBS | Chr7 | 10556441 | C-T | HET | ||
| SBS | Chr7 | 13388814 | C-G | HET | ||
| SBS | Chr7 | 15963790 | C-T | Homo | ||
| SBS | Chr7 | 19382144 | G-A | HET | ||
| SBS | Chr7 | 26678417 | A-C | Homo | ||
| SBS | Chr8 | 6502315 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g11050 |
| SBS | Chr8 | 8140699 | T-A | Homo | ||
| SBS | Chr8 | 26129226 | A-T | HET | ||
| SBS | Chr8 | 27992938 | A-T | HET | ||
| SBS | Chr9 | 3017925 | G-A | HET | ||
| SBS | Chr10 | 3855531 | G-A | HET | ||
| SBS | Chr11 | 16104838 | C-T | HET | ||
| SBS | Chr11 | 18007605 | A-G | HET | ||
| SBS | Chr12 | 12325967 | C-T | HET | ||
| SBS | Chr12 | 23389362 | T-C | Homo |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 306066 | 306067 | 1 | |
| Deletion | Chr2 | 931392 | 931394 | 2 | |
| Deletion | Chr12 | 2180572 | 2180574 | 2 | |
| Deletion | Chr3 | 4934975 | 4934985 | 10 | |
| Deletion | Chr12 | 5466825 | 5466829 | 4 | |
| Deletion | Chr7 | 7379457 | 7379458 | 1 | |
| Deletion | Chr9 | 12569139 | 12569140 | 1 | |
| Deletion | Chr7 | 13396453 | 13396465 | 12 | |
| Deletion | Chr11 | 13658809 | 13658813 | 4 | |
| Deletion | Chr1 | 15059306 | 15059310 | 4 | |
| Deletion | Chr11 | 16338495 | 16338496 | 1 | LOC_Os11g28370 |
| Deletion | Chr4 | 16372389 | 16372393 | 4 | LOC_Os04g27700 |
| Deletion | Chr4 | 19784630 | 19784632 | 2 | |
| Deletion | Chr4 | 20779014 | 20779018 | 4 | |
| Deletion | Chr6 | 27243663 | 27243664 | 1 | LOC_Os06g45030 |
| Deletion | Chr2 | 30643461 | 30643469 | 8 | |
| Deletion | Chr1 | 31441095 | 31441101 | 6 | LOC_Os01g54650 |
| Deletion | Chr1 | 37542387 | 37542416 | 29 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 4353459 | 4353459 | 1 | LOC_Os07g08450 |
| Insertion | Chr8 | 23824648 | 23824648 | 1 | LOC_Os08g37600 |
| Insertion | Chr9 | 21587498 | 21587498 | 1 | |
| Insertion | Chr12 | 25785657 | 25785658 | 2 | |
| Insertion | Chr8 | 27201068 | 27201068 | 1 | |
| Insertion | Chr10 | 4817846 | 4817847 | 2 | |
| Insertion | Chr12 | 18133235 | 18133236 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 18314915 | 18581368 | LOC_Os05g31480 |
| Inversion | Chr5 | 18314925 | 18581510 | LOC_Os05g31480 |
No Translocation