Search Results
| Mutant Information |
|---|
| Mutant Name | FN2272-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2272-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9235107 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g16290 |
| SBS | Chr1 | 10876793 | T-A | HET | ||
| SBS | Chr1 | 20688111 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g37070 |
| SBS | Chr1 | 27206905 | T-A | HET | ||
| SBS | Chr2 | 26999246 | T-A | HET | ||
| SBS | Chr2 | 27072079 | G-A | HET | ||
| SBS | Chr2 | 30909987 | C-A | HET | ||
| SBS | Chr3 | 843553 | A-G | HET | ||
| SBS | Chr3 | 9201235 | A-T | Homo | ||
| SBS | Chr3 | 13480792 | G-C | HET | ||
| SBS | Chr3 | 25785394 | C-T | HET | ||
| SBS | Chr3 | 30157618 | C-T | Homo | ||
| SBS | Chr3 | 32739930 | A-C | HET | ||
| SBS | Chr4 | 1474122 | C-T | Homo | ||
| SBS | Chr4 | 8560639 | C-T | HET | STOP_GAINED | LOC_Os04g15760 |
| SBS | Chr4 | 14567068 | C-G | HET | ||
| SBS | Chr4 | 27415407 | G-A | HET | ||
| SBS | Chr5 | 3738190 | A-T | HET | ||
| SBS | Chr5 | 4680449 | C-T | HET | ||
| SBS | Chr5 | 6300723 | T-A | HET | ||
| SBS | Chr5 | 12804950 | G-A | Homo | ||
| SBS | Chr5 | 21794397 | C-T | Homo | ||
| SBS | Chr6 | 2856947 | T-C | HET | ||
| SBS | Chr6 | 17926940 | C-T | HET | ||
| SBS | Chr6 | 22041606 | C-T | HET | ||
| SBS | Chr7 | 12403177 | C-T | Homo | ||
| SBS | Chr7 | 26844200 | G-A | Homo | ||
| SBS | Chr8 | 23439648 | T-C | HET | ||
| SBS | Chr8 | 24826593 | A-T | HET | ||
| SBS | Chr9 | 395704 | G-A | HET | ||
| SBS | Chr9 | 7291567 | A-G | Homo | ||
| SBS | Chr9 | 11655083 | G-A | Homo | ||
| SBS | Chr10 | 2685307 | C-T | HET | ||
| SBS | Chr10 | 7266042 | G-A | HET | ||
| SBS | Chr11 | 7210058 | A-C | HET | ||
| SBS | Chr11 | 9998215 | C-A | HET | ||
| SBS | Chr12 | 20159627 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g33330 |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 442320 | 442326 | 6 | |
| Deletion | Chr3 | 2951866 | 2951869 | 3 | LOC_Os03g05880 |
| Deletion | Chr5 | 3309325 | 3309329 | 4 | |
| Deletion | Chr10 | 4019945 | 4019953 | 8 | |
| Deletion | Chr4 | 4123782 | 4123787 | 5 | |
| Deletion | Chr9 | 7407879 | 7407906 | 27 | |
| Deletion | Chr9 | 8433096 | 8433105 | 9 | |
| Deletion | Chr5 | 8898617 | 8898618 | 1 | |
| Deletion | Chr10 | 13254857 | 13254866 | 9 | |
| Deletion | Chr8 | 14176234 | 14176243 | 9 | |
| Deletion | Chr3 | 14950182 | 14950189 | 7 | LOC_Os03g26090 |
| Deletion | Chr6 | 21982948 | 21982949 | 1 | LOC_Os06g37224 |
| Deletion | Chr7 | 22068879 | 22068891 | 12 | |
| Deletion | Chr12 | 22599902 | 22599919 | 17 | |
| Deletion | Chr6 | 26745876 | 26745899 | 23 | |
| Deletion | Chr8 | 27198408 | 27198410 | 2 | |
| Deletion | Chr6 | 29997395 | 29997403 | 8 | |
| Deletion | Chr1 | 35076988 | 35077002 | 14 | |
| Deletion | Chr1 | 36947513 | 36947515 | 2 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 30567595 | 30567596 | 2 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 14501676 | Chr6 | 19264314 |