Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23837682	C-A	HET
SBS	Chr1	35267209	A-T	HET
SBS	Chr1	39266507	T-A	Homo
SBS	Chr1	42404708	G-A	HET
SBS	Chr1	7813710	T-C	Homo
SBS	Chr10	10422605	C-T	Homo
SBS	Chr10	12496852	C-A	HET
SBS	Chr10	3350907	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g06520
SBS	Chr10	7581138	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g13950
SBS	Chr10	7581139	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g13950
SBS	Chr12	14528022	G-A	HET
SBS	Chr2	11103495	G-A	HET
SBS	Chr2	14864703	G-A	Homo
SBS	Chr2	35113965	A-G	Homo
SBS	Chr3	27069485	C-T	HET
SBS	Chr3	31514800	A-G	HET
SBS	Chr3	36295357	G-C	HET
SBS	Chr3	5134648	G-A	Homo
SBS	Chr4	18930274	G-T	HET
SBS	Chr4	23133635	G-T	HET
SBS	Chr4	23133636	C-T	HET
SBS	Chr5	13686113	A-G	Homo
SBS	Chr5	23472746	A-T	Homo
SBS	Chr6	21267318	A-C	HET
SBS	Chr6	8864791	G-A	HET
SBS	Chr7	10896600	C-T	HET
SBS	Chr7	15557058	G-A	HET
SBS	Chr7	22697777	A-G	HET
SBS	Chr8	6779509	C-G	Homo
SBS	Chr9	20323341	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g34870

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3387473	3387491	18
Deletion	Chr5	3499238	3499245	7
Deletion	Chr9	3798655	3798667	12
Deletion	Chr12	4307700	4307712	12	LOC_Os12g08490
Deletion	Chr1	4657342	4657344	2
Deletion	Chr8	5961801	5961802	1
Deletion	Chr1	8672995	8673000	5
Deletion	Chr8	10060037	10060044	7
Deletion	Chr5	11522008	11522014	6
Deletion	Chr8	13101001	13186000	84999	13
Deletion	Chr8	13192001	13251000	58999	9
Deletion	Chr8	13253001	13278000	24999	5
Deletion	Chr6	14981250	14981255	5
Deletion	Chr5	16276901	16276905	4
Deletion	Chr12	16717554	16717558	4
Deletion	Chr4	22192614	22192620	6	LOC_Os04g36740
Deletion	Chr5	23994195	23994200	5
Deletion	Chr11	25612900	25612901	1
Deletion	Chr4	28111001	28117000	5999	2
Deletion	Chr4	33430917	33430921	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	4286486	4286488	3
Insertion	Chr7	4843878	4843878	1	LOC_Os07g09240

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9639073	10333254	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2647204	Chr7	7323639	2
Translocation	Chr8	10333237	Chr7	2378500	LOC_Os08g16880
Translocation	Chr8	22684682	Chr7	2374241
Translocation	Chr12	22869448	Chr6	18063788	2
Translocation	Chr7	23767442	Chr1	20739026	2
Translocation	Chr11	24451275	Chr3	12581340	LOC_Os11g40870

Main menu