Search Results
| Mutant Information |
|---|
| Mutant Name | FN2276-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2276-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31899715 | C-T | HET | ||
| SBS | Chr2 | 10514686 | C-T | Homo | ||
| SBS | Chr2 | 30450153 | A-T | HET | ||
| SBS | Chr3 | 3451815 | A-T | HET | ||
| SBS | Chr3 | 23206016 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g41780 |
| SBS | Chr4 | 24950897 | G-C | Homo | ||
| SBS | Chr4 | 27417725 | T-A | Homo | ||
| SBS | Chr4 | 35051720 | C-T | HET | ||
| SBS | Chr5 | 10994013 | G-T | HET | ||
| SBS | Chr5 | 21918763 | C-T | HET | ||
| SBS | Chr7 | 8466360 | C-T | HET | ||
| SBS | Chr7 | 18078384 | C-G | Homo | ||
| SBS | Chr9 | 6628156 | C-T | Homo | ||
| SBS | Chr9 | 10079319 | C-T | Homo | ||
| SBS | Chr9 | 22107932 | T-C | HET | ||
| SBS | Chr9 | 22395028 | A-G | HET | ||
| SBS | Chr10 | 120484 | G-A | HET | ||
| SBS | Chr11 | 4587224 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g08620 |
| SBS | Chr11 | 7881682 | G-T | HET | ||
| SBS | Chr11 | 12643132 | C-T | HET | ||
| SBS | Chr12 | 8338406 | C-G | HET | ||
| SBS | Chr12 | 8792325 | T-C | HET | ||
| SBS | Chr12 | 25619015 | C-G | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 451059 | 451061 | 2 | |
| Deletion | Chr6 | 2279243 | 2279244 | 1 | |
| Deletion | Chr1 | 2761584 | 2761594 | 10 | |
| Deletion | Chr1 | 3748366 | 3748367 | 1 | |
| Deletion | Chr12 | 5417262 | 5417267 | 5 | LOC_Os12g10250 |
| Deletion | Chr12 | 5597812 | 5597814 | 2 | LOC_Os12g10550 |
| Deletion | Chr5 | 5732001 | 5745000 | 12999 | 2 |
| Deletion | Chr6 | 11500270 | 11500273 | 3 | LOC_Os06g20050 |
| Deletion | Chr1 | 13599541 | 13599545 | 4 | |
| Deletion | Chr2 | 14200146 | 14200152 | 6 | |
| Deletion | Chr4 | 16592953 | 16592956 | 3 | |
| Deletion | Chr5 | 17193152 | 17193153 | 1 | |
| Deletion | Chr11 | 17837604 | 17837609 | 5 | |
| Deletion | Chr7 | 18265403 | 18265414 | 11 | |
| Deletion | Chr11 | 18875457 | 18875460 | 3 | |
| Deletion | Chr3 | 19675173 | 19675176 | 3 | |
| Deletion | Chr11 | 20579125 | 20579136 | 11 | |
| Deletion | Chr3 | 22132950 | 22132957 | 7 | LOC_Os03g39780 |
| Deletion | Chr11 | 26990054 | 26990063 | 9 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 2202219 | 2202220 | 2 | |
| Insertion | Chr12 | 13097748 | 13097749 | 2 |
Inversions: 5
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 7064497 | Chr7 | 27684566 | 2 |
| Translocation | Chr8 | 7065214 | Chr7 | 27684554 | 2 |
| Translocation | Chr8 | 7065215 | Chr2 | 35859429 | 2 |
| Translocation | Chr10 | 11743548 | Chr8 | 22563507 | |
| Translocation | Chr10 | 11744424 | Chr8 | 22563512 | |
| Translocation | Chr12 | 21472515 | Chr1 | 16011387 | |
| Translocation | Chr12 | 23523403 | Chr1 | 16012114 |