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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	12326105	T-C	HET
SBS	Chr10	1353092	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g03200
SBS	Chr10	17150024	C-T	HET
SBS	Chr10	9225829	T-G	Homo
SBS	Chr11	11477660	G-A	HET
SBS	Chr11	12742756	T-C	HET
SBS	Chr11	17126274	A-C	HET
SBS	Chr11	3904842	A-G	HET
SBS	Chr12	10271759	G-T	Homo
SBS	Chr12	22156139	G-A	HET	STOP_GAINED	LOC_Os12g36150
SBS	Chr12	23178514	T-C	HET
SBS	Chr12	24162179	C-G	HET
SBS	Chr12	7611130	A-G	Homo
SBS	Chr2	32764606	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr2	35883659	G-C	HET
SBS	Chr3	19127897	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33480
SBS	Chr3	23324511	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g41980
SBS	Chr3	8934073	G-A	Homo
SBS	Chr4	10640225	G-C	HET
SBS	Chr4	13439318	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23510
SBS	Chr4	27250874	G-A	HET
SBS	Chr5	18278771	A-T	HET
SBS	Chr5	19884892	G-A	HET
SBS	Chr5	29772815	C-T	Homo
SBS	Chr5	7210686	G-A	HET
SBS	Chr5	9795742	T-C	HET
SBS	Chr6	13019239	G-C	Homo
SBS	Chr6	2232486	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05050
SBS	Chr7	11702965	T-C	HET
SBS	Chr7	11702966	A-C	HET
SBS	Chr7	18739681	T-C	HET
SBS	Chr7	21447612	C-T	HET
SBS	Chr7	6188866	T-C	HET
SBS	Chr8	17195387	G-A	HET
SBS	Chr8	17601925	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28770
SBS	Chr9	14756658	G-A	Homo
SBS	Chr9	2655440	C-T	HET
SBS	Chr9	5284467	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09760
SBS	Chr9	5495450	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1690613	1690639	26
Deletion	Chr7	2513601	2513610	9
Deletion	Chr4	3471697	3471705	8
Deletion	Chr3	7407866	7407873	7
Deletion	Chr10	7757140	7757156	16
Deletion	Chr5	7961516	7961518	2
Deletion	Chr3	12536117	12536118	1
Deletion	Chr11	13133298	13133300	2
Deletion	Chr8	17027936	17027939	3	LOC_Os08g27940
Deletion	Chr5	18036186	18036191	5
Deletion	Chr7	21335022	21335027	5
Deletion	Chr10	22288569	22288570	1
Deletion	Chr5	22803385	22803388	3
Deletion	Chr12	26284458	26284464	6
Deletion	Chr12	27124001	27166000	41999	8
Deletion	Chr12	27169001	27259000	89999	17
Deletion	Chr6	30832126	30832134	8
Deletion	Chr2	31885281	31885283	2
Deletion	Chr4	35074674	35074677	3
Deletion	Chr1	36188005	36188007	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	19065451	19065451	1
Insertion	Chr7	8766718	8766718	1	LOC_Os07g15210

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11748986	11760311	2
Inversion	Chr2	11748991	11760308	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	10127990	Chr4	8208152	LOC_Os08g16550

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