Search Results
| Mutant Information |
|---|
| Mutant Name | FN2286 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2286 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16577699 | G-A | HET | ||
| SBS | Chr1 | 24624115 | C-T | HET | ||
| SBS | Chr2 | 18397485 | A-C | Homo | ||
| SBS | Chr2 | 20232167 | T-C | Homo | ||
| SBS | Chr3 | 12838341 | G-A | HET | ||
| SBS | Chr3 | 22843833 | C-A | Homo | ||
| SBS | Chr4 | 1690863 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g03790 |
| SBS | Chr4 | 24810089 | C-A | HET | ||
| SBS | Chr5 | 620163 | A-G | HET | ||
| SBS | Chr5 | 4702244 | C-T | HET | ||
| SBS | Chr5 | 7803842 | T-A | Homo | ||
| SBS | Chr5 | 7803843 | G-T | Homo | ||
| SBS | Chr5 | 9303574 | T-C | Homo | ||
| SBS | Chr5 | 12815508 | G-A | HET | ||
| SBS | Chr5 | 29686544 | G-T | Homo | ||
| SBS | Chr6 | 23222505 | C-T | HET | ||
| SBS | Chr7 | 14630180 | C-T | HET | ||
| SBS | Chr7 | 19808850 | C-T | HET | ||
| SBS | Chr7 | 22584458 | C-T | HET | ||
| SBS | Chr8 | 7961376 | T-C | Homo | ||
| SBS | Chr8 | 22099746 | G-A | HET | ||
| SBS | Chr8 | 22242275 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g35250 |
| SBS | Chr8 | 23121234 | C-A | HET | ||
| SBS | Chr9 | 8971865 | T-A | Homo | ||
| SBS | Chr9 | 11585107 | T-A | Homo | ||
| SBS | Chr9 | 15374347 | C-T | Homo | ||
| SBS | Chr9 | 19282406 | C-T | HET | ||
| SBS | Chr10 | 3468369 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g06700 |
| SBS | Chr10 | 3468370 | C-T | Homo | ||
| SBS | Chr10 | 8485216 | T-A | HET | ||
| SBS | Chr10 | 21864661 | A-C | Homo | ||
| SBS | Chr11 | 15390086 | C-T | Homo | ||
| SBS | Chr11 | 19225542 | G-C | Homo |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2835769 | 2835770 | 1 | |
| Deletion | Chr9 | 8991545 | 8991546 | 1 | |
| Deletion | Chr12 | 9014889 | 9014892 | 3 | |
| Deletion | Chr9 | 9017555 | 9017562 | 7 | |
| Deletion | Chr4 | 9368996 | 9368997 | 1 | |
| Deletion | Chr9 | 11632996 | 11633000 | 4 | |
| Deletion | Chr1 | 12609591 | 12609592 | 1 | LOC_Os01g22420 |
| Deletion | Chr2 | 13636210 | 13636252 | 42 | |
| Deletion | Chr4 | 16436978 | 16436988 | 10 | |
| Deletion | Chr12 | 17729001 | 17776000 | 46999 | 2 |
| Deletion | Chr2 | 17760409 | 17760414 | 5 | |
| Deletion | Chr2 | 18323498 | 18323504 | 6 | |
| Deletion | Chr2 | 18490765 | 18490766 | 1 | |
| Deletion | Chr1 | 21198569 | 21198570 | 1 | |
| Deletion | Chr5 | 24651216 | 24651223 | 7 | |
| Deletion | Chr11 | 25321904 | 25321912 | 8 | LOC_Os11g42070 |
| Deletion | Chr5 | 28309931 | 28309934 | 3 | LOC_Os05g49360 |
| Deletion | Chr3 | 30245404 | 30245410 | 6 | |
| Deletion | Chr2 | 33437587 | 33437595 | 8 | LOC_Os02g54590 |
| Deletion | Chr3 | 33558815 | 33558816 | 1 | |
| Deletion | Chr1 | 39296404 | 39296412 | 8 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 4942524 | 4942524 | 1 | |
| Insertion | Chr3 | 6532810 | 6532811 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 6146704 | 6154544 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 14259380 | Chr10 | 5723110 | |
| Translocation | Chr4 | 22896688 | Chr3 | 26518320 | 2 |