Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN2289 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2289 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12201496 | G-A | HET | ||
| SBS | Chr10 | 3308685 | C-G | Homo | ||
| SBS | Chr10 | 7618566 | C-A | HET | ||
| SBS | Chr11 | 19259106 | G-A | HET | ||
| SBS | Chr11 | 28663691 | A-T | Homo | ||
| SBS | Chr11 | 7744569 | T-G | HET | ||
| SBS | Chr12 | 12531153 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g22230 |
| SBS | Chr12 | 22558544 | A-G | HET | ||
| SBS | Chr12 | 9650449 | G-A | HET | ||
| SBS | Chr2 | 11886366 | C-T | HET | ||
| SBS | Chr2 | 26179050 | A-T | Homo | ||
| SBS | Chr2 | 7211217 | A-G | HET | ||
| SBS | Chr3 | 21904340 | A-G | HET | ||
| SBS | Chr3 | 2206718 | T-A | HET | ||
| SBS | Chr3 | 2206721 | C-A | HET | ||
| SBS | Chr3 | 6784908 | A-G | HET | ||
| SBS | Chr3 | 9643894 | T-A | HET | ||
| SBS | Chr3 | 9689623 | A-G | HET | ||
| SBS | Chr5 | 6031590 | C-T | HET | ||
| SBS | Chr5 | 7599077 | T-A | HET | ||
| SBS | Chr6 | 10942308 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g19230 |
| SBS | Chr6 | 15110570 | G-A | HET | ||
| SBS | Chr6 | 16531426 | G-C | HET | ||
| SBS | Chr7 | 6085398 | A-G | Homo | ||
| SBS | Chr8 | 12154311 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g20250 |
| SBS | Chr8 | 1453727 | C-T | HET | ||
| SBS | Chr8 | 19987271 | T-A | Homo | ||
| SBS | Chr8 | 3921400 | A-G | Homo | ||
| SBS | Chr9 | 10407784 | A-G | HET | ||
| SBS | Chr9 | 11549418 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g19290 |
| SBS | Chr9 | 14167362 | G-A | HET | ||
| SBS | Chr9 | 14700733 | A-C | HET | ||
| SBS | Chr9 | 8962893 | G-A | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 891205 | 891207 | 2 | LOC_Os10g02440 |
| Deletion | Chr8 | 3395091 | 3395095 | 4 | |
| Deletion | Chr12 | 4863521 | 4863527 | 6 | LOC_Os12g09290 |
| Deletion | Chr7 | 5284572 | 5284573 | 1 | |
| Deletion | Chr12 | 5696635 | 5696639 | 4 | |
| Deletion | Chr1 | 7571455 | 7571457 | 2 | |
| Deletion | Chr8 | 13492436 | 13492439 | 3 | |
| Deletion | Chr12 | 15425789 | 15425790 | 1 | LOC_Os12g26400 |
| Deletion | Chr5 | 17458058 | 17458061 | 3 | |
| Deletion | Chr9 | 18197338 | 18197341 | 3 | |
| Deletion | Chr7 | 18419406 | 18419409 | 3 | LOC_Os07g31130 |
| Deletion | Chr6 | 20751942 | 20751943 | 1 | LOC_Os06g35560 |
| Deletion | Chr9 | 21373079 | 21373081 | 2 | |
| Deletion | Chr12 | 26959320 | 26959321 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 19339671 | 19339672 | 2 | |
| Insertion | Chr12 | 26316418 | 26316419 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 2489849 | 2490079 | LOC_Os11g05520 |
| Inversion | Chr3 | 11437687 | 11437844 | |
| Inversion | Chr8 | 19609727 | 20156547 | 2 |
| Inversion | Chr4 | 27957191 | 27957650 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 18320297 | Chr4 | 8532069 | 2 |
| Translocation | Chr12 | 26468237 | Chr9 | 14135025 | |
| Translocation | Chr12 | 26501618 | Chr9 | 14135014 | LOC_Os12g42640 |