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Mutant Information

Mutant Name	FN229-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN229-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 51

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8971369	T-A	HET	INTERGENIC
SBS	Chr1	10946304	C-A	HOMO	INTERGENIC
SBS	Chr1	20126144	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36294
SBS	Chr1	20126146	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	23740814	G-A	HOMO	UTR_3_PRIME
SBS	Chr1	25559275	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	36395272	A-T	HOMO	INTERGENIC
SBS	Chr2	7185744	T-G	HET	INTRON
SBS	Chr2	7325345	C-A	HET	INTERGENIC
SBS	Chr2	10522778	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18110
SBS	Chr2	33329879	T-A	HOMO	INTERGENIC
SBS	Chr3	1617800	C-T	HET	INTERGENIC
SBS	Chr3	3215027	A-T	HET	INTERGENIC
SBS	Chr3	6687986	C-A	HET	INTRON
SBS	Chr3	6687991	C-T	HET	INTRON
SBS	Chr3	15540149	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27140
SBS	Chr3	16741925	C-T	HOMO	INTERGENIC
SBS	Chr4	5750223	T-A	HET	INTERGENIC
SBS	Chr4	6513962	C-A	HET	INTRON
SBS	Chr4	9265771	T-C	HET	INTERGENIC
SBS	Chr4	10270969	G-C	HET	INTERGENIC
SBS	Chr4	14388154	A-G	HET	INTERGENIC
SBS	Chr4	14388164	G-A	HET	INTERGENIC
SBS	Chr4	17332057	C-T	HET	INTRON
SBS	Chr5	446593	G-A	HET	UTR_5_PRIME
SBS	Chr5	560309	G-T	HET	INTRON
SBS	Chr5	8959723	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g15880
SBS	Chr5	13256513	C-G	HET	INTERGENIC
SBS	Chr5	18368174	C-T	HOMO	INTERGENIC
SBS	Chr5	21245259	C-A	HET	INTERGENIC
SBS	Chr6	12562609	C-T	HET	INTRON
SBS	Chr6	18911119	A-G	HET	INTERGENIC
SBS	Chr7	5543595	A-G	HET	INTERGENIC
SBS	Chr7	14494831	T-C	HOMO	INTERGENIC
SBS	Chr8	2920087	C-T	HET	INTRON
SBS	Chr8	3165698	T-A	HET	INTERGENIC
SBS	Chr8	3165699	T-A	HET	INTERGENIC
SBS	Chr8	7467168	T-C	HET	INTERGENIC
SBS	Chr8	26109145	C-T	HOMO	INTERGENIC
SBS	Chr8	27425447	C-T	HET	INTERGENIC
SBS	Chr9	4526292	C-G	HOMO	INTERGENIC
SBS	Chr9	5658105	C-A	HOMO	INTRON
SBS	Chr9	11649656	T-C	HET	INTERGENIC
SBS	Chr10	8708446	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g17310
SBS	Chr10	12579663	C-T	HET	INTERGENIC
SBS	Chr11	1221465	C-G	HET	INTERGENIC
SBS	Chr11	24256389	T-C	HET	INTERGENIC
SBS	Chr11	26393555	C-A	HET	INTERGENIC
SBS	Chr12	16375691	C-T	HOMO	INTERGENIC
SBS	Chr12	16375692	C-T	HOMO	INTERGENIC
SBS	Chr12	25996986	G-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	356951	356963	12
Deletion	Chr12	1407641	1407648	7
Deletion	Chr2	2069883	2069885	2
Deletion	Chr2	4370008	4370010	2
Deletion	Chr1	5634714	5634726	12
Deletion	Chr8	6566995	6567000	5
Deletion	Chr3	6752892	6752893	1
Deletion	Chr10	7862352	7862379	27
Deletion	Chr8	8789429	8789431	2
Deletion	Chr12	8881998	8882001	3
Deletion	Chr10	9069698	9069729	31
Deletion	Chr12	10454338	10454358	20
Deletion	Chr6	13777313	13801924	24611	2
Deletion	Chr7	20895688	20895689	1
Deletion	Chr4	21728966	21728995	29
Deletion	Chr4	22445831	22445838	7	LOC_Os04g37750
Deletion	Chr12	26543573	26543579	6	LOC_Os12g42720
Deletion	Chr2	27536432	27536438	6
Deletion	Chr1	30194597	30194599	2	LOC_Os01g52550

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	18346545	18346546	2
Insertion	Chr4	21130579	21130580	2
Insertion	Chr3	11251742	11251742	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9456299	20680968	LOC_Os07g16210
Inversion	Chr7	20454675	20680927
Inversion	Chr2	25318189	25348270	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	4651324	Chr1	5444514	2
Translocation	Chr2	13467137	Chr1	26060842	LOC_Os01g45880
Translocation	Chr7	20639913	Chr6	4651348	LOC_Os06g09260

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