Search Results
| Mutant Information |
|---|
| Mutant Name | FN2291 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2291 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5753719 | C-T | HET | ||
| SBS | Chr1 | 13020010 | G-A | HET | SPLICE_SITE_ACCEPTOR | LOC_Os01g23160 |
| SBS | Chr1 | 38259977 | C-T | Homo | ||
| SBS | Chr1 | 39010597 | A-C | HET | ||
| SBS | Chr2 | 3585128 | A-G | Homo | ||
| SBS | Chr2 | 8906836 | A-G | HET | ||
| SBS | Chr2 | 20474358 | G-A | HET | ||
| SBS | Chr2 | 25582054 | G-T | HET | ||
| SBS | Chr2 | 31272021 | C-T | HET | ||
| SBS | Chr3 | 487107 | C-T | HET | ||
| SBS | Chr3 | 6129404 | A-T | Homo | ||
| SBS | Chr3 | 9919971 | G-A | HET | ||
| SBS | Chr3 | 9919972 | C-T | HET | ||
| SBS | Chr4 | 1537358 | C-A | HET | ||
| SBS | Chr4 | 18449495 | T-G | HET | ||
| SBS | Chr5 | 4912377 | A-T | HET | ||
| SBS | Chr5 | 11749525 | G-A | HET | ||
| SBS | Chr5 | 12750995 | A-C | HET | ||
| SBS | Chr5 | 15591972 | A-G | HET | ||
| SBS | Chr6 | 17582160 | T-C | HET | ||
| SBS | Chr7 | 4360272 | G-T | HET | ||
| SBS | Chr7 | 4360273 | C-G | HET | ||
| SBS | Chr7 | 4721292 | G-C | HET | ||
| SBS | Chr7 | 9493787 | A-T | HET | ||
| SBS | Chr7 | 16649794 | C-T | HET | ||
| SBS | Chr8 | 18032909 | C-T | HET | ||
| SBS | Chr8 | 21176741 | A-C | HET | ||
| SBS | Chr8 | 24366915 | A-G | HET | ||
| SBS | Chr8 | 24734784 | T-C | HET | ||
| SBS | Chr9 | 4414342 | T-A | HET | ||
| SBS | Chr12 | 6559711 | G-A | HET |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 3626981 | 3626985 | 4 | LOC_Os02g07070 |
| Deletion | Chr10 | 4536526 | 4536528 | 2 | |
| Deletion | Chr4 | 7037379 | 7037388 | 9 | |
| Deletion | Chr7 | 10730926 | 10730928 | 2 | |
| Deletion | Chr3 | 12030001 | 12070000 | 39999 | 3 |
| Deletion | Chr5 | 13287153 | 13287156 | 3 | |
| Deletion | Chr12 | 15373847 | 15373848 | 1 | |
| Deletion | Chr11 | 16074507 | 16074512 | 5 | |
| Deletion | Chr12 | 16488872 | 16488880 | 8 | |
| Deletion | Chr7 | 16732909 | 16732919 | 10 | |
| Deletion | Chr7 | 17041667 | 17041668 | 1 | LOC_Os07g29080 |
| Deletion | Chr5 | 17703001 | 17765000 | 61999 | 13 |
| Deletion | Chr2 | 18600069 | 18600072 | 3 | |
| Deletion | Chr1 | 19598163 | 19598172 | 9 | LOC_Os01g35420 |
| Deletion | Chr2 | 20718753 | 20718760 | 7 | LOC_Os02g34560 |
| Deletion | Chr2 | 20758791 | 20758795 | 4 | |
| Deletion | Chr8 | 21546722 | 21546724 | 2 | |
| Deletion | Chr5 | 26579010 | 26579014 | 4 | |
| Deletion | Chr1 | 27097822 | 27097823 | 1 | |
| Deletion | Chr6 | 28834576 | 28834579 | 3 | |
| Deletion | Chr2 | 31250228 | 31250229 | 1 | |
| Deletion | Chr2 | 32094752 | 32094753 | 1 | |
| Deletion | Chr1 | 41264171 | 41264172 | 1 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 11052243 | 11052244 | 2 | |
| Insertion | Chr5 | 28323438 | 28323439 | 2 | |
| Insertion | Chr12 | 8958730 | 8958730 | 1 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 19143681 | Chr6 | 1170597 | |
| Translocation | Chr10 | 19146374 | Chr6 | 1170594 |