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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21980810	C-T	HET
SBS	Chr1	26233179	T-G	Homo
SBS	Chr1	26571566	G-C	HET
SBS	Chr1	5819380	G-A	HET
SBS	Chr1	6087620	C-T	HET
SBS	Chr10	1298832	T-A	HET
SBS	Chr10	1849956	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g04040
SBS	Chr10	22708879	T-G	HET
SBS	Chr11	22270287	G-T	HET
SBS	Chr11	5800714	A-T	HET
SBS	Chr12	11646194	C-T	HET
SBS	Chr12	1359054	C-T	Homo
SBS	Chr12	16760176	T-C	HET
SBS	Chr2	1901469	G-A	HET
SBS	Chr2	22928135	C-T	HET
SBS	Chr2	32143355	G-A	HET	STOP_GAINED	LOC_Os02g52530
SBS	Chr3	17944944	C-T	HET
SBS	Chr3	19835721	C-T	HET
SBS	Chr3	29833045	C-T	Homo
SBS	Chr3	30921528	C-A	Homo
SBS	Chr4	3906948	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07340
SBS	Chr4	5665310	A-G	HET
SBS	Chr5	19901847	C-T	HET
SBS	Chr6	10565146	C-T	HET
SBS	Chr6	15245702	C-G	HET
SBS	Chr6	15505899	A-T	HET
SBS	Chr6	17655537	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30520
SBS	Chr6	3732465	G-A	HET
SBS	Chr6	5346612	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g10410
SBS	Chr7	800106	C-T	HET
SBS	Chr8	1585626	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03390
SBS	Chr8	28147305	C-A	HET
SBS	Chr9	12523138	C-T	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	500382	500386	4
Deletion	Chr7	7381695	7381701	6
Deletion	Chr9	9101904	9101909	5
Deletion	Chr6	15505885	15505886	1
Deletion	Chr12	17616139	17616219	80
Deletion	Chr12	17678558	17678559	1
Deletion	Chr2	20101219	20101224	5
Deletion	Chr3	28415001	28429000	13999	2
Deletion	Chr1	28768513	28768514	1
Deletion	Chr2	34062903	34062909	6
Deletion	Chr1	36339146	36339169	23
Deletion	Chr1	38922835	38922836	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31772635	31772635	1
Insertion	Chr1	4367350	4367351	2
Insertion	Chr12	11336483	11336483	1
Insertion	Chr3	2917220	2917221	2
Insertion	Chr5	8116387	8116387	1	LOC_Os05g14400
Insertion	Chr7	6526429	6526429	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	370917	838150	LOC_Os03g01590
Inversion	Chr3	370955	838155	LOC_Os03g01590
Inversion	Chr4	25327918	25328353	LOC_Os04g42784

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	5255595	Chr3	29248421	LOC_Os05g09370
Translocation	Chr5	5262900	Chr3	29248433
Translocation	Chr8	6755576	Chr3	28418236
Translocation	Chr8	6755578	Chr3	28421585
Translocation	Chr9	12450578	Chr8	13011925	2
Translocation	Chr9	12458665	Chr8	12985186	LOC_Os09g20684
Translocation	Chr4	15336877	Chr1	13831272
Translocation	Chr11	16578628	Chr5	5262911	LOC_Os11g28670
Translocation	Chr9	17612158	Chr3	28404840
Translocation	Chr9	17612166	Chr3	28418063
Translocation	Chr5	27959020	Chr3	23444769	2
Translocation	Chr5	27959438	Chr3	23444763	2

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