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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2168860	C-T	HET
SBS	Chr1	12705356	C-T	HET	SPLICE_SITE_DONOR	LOC_Os01g22600
SBS	Chr1	18274032	G-C	HET
SBS	Chr1	32521712	G-A	HET
SBS	Chr1	32893120	A-C	HET
SBS	Chr1	40272336	G-A	Homo
SBS	Chr2	19891413	A-G	HET
SBS	Chr3	1624622	C-T	HET
SBS	Chr3	7730142	G-A	HET
SBS	Chr3	7730143	C-A	HET
SBS	Chr3	12360213	G-A	HET
SBS	Chr3	31497481	T-G	Homo
SBS	Chr4	2813026	C-T	HET
SBS	Chr4	7468946	G-A	Homo
SBS	Chr4	21877173	T-G	HET
SBS	Chr4	30200489	G-A	Homo
SBS	Chr4	32273567	C-G	Homo
SBS	Chr5	5256182	G-A	HET
SBS	Chr6	9097354	G-A	HET
SBS	Chr6	11471268	C-T	HET
SBS	Chr7	4591789	C-T	HET
SBS	Chr7	14811772	A-G	Homo
SBS	Chr7	22026733	G-T	HET
SBS	Chr8	5227749	A-G	HET
SBS	Chr8	13150296	C-G	HET
SBS	Chr8	23414974	G-A	HET
SBS	Chr8	23568504	G-C	Homo
SBS	Chr10	12588510	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24530
SBS	Chr10	12631736	G-A	HET
SBS	Chr10	12631739	C-A	HET
SBS	Chr11	12788717	G-A	Homo	STOP_GAINED	LOC_Os11g22310
SBS	Chr11	15541738	G-A	Homo
SBS	Chr12	20247035	T-G	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr9	6790433	6790434	1
Deletion	Chr2	7392392	7392394	2
Deletion	Chr7	10822014	10822024	10
Deletion	Chr11	16629562	16629563	1
Deletion	Chr6	21858057	21858060	3
Deletion	Chr3	28424665	28424669	4
Deletion	Chr1	36738893	36738898	5
Deletion	Chr1	37930978	37930981	3

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	23834715	23834715	1
Insertion	Chr4	2103035	2103036	2
Insertion	Chr4	12448379	12448381	3	LOC_Os04g21990
Insertion	Chr4	29429981	29429982	2
Insertion	Chr11	21084805	21084805	1
Insertion	Chr5	29852789	29852789	1
Insertion	Chr6	10986230	10986230	1
Insertion	Chr7	19805571	19805571	1
Insertion	Chr11	3060239	3060239	1
Insertion	Chr12	22564309	22564309	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr7	878583	878701
Inversion	Chr4	5584599	6311804
Inversion	Chr4	5814580	6311814
Inversion	Chr4	20764624	21083806
Inversion	Chr4	20764636	21083821

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1197	Chr7	1263
Translocation	Chr12	888340	Chr5	15739827	LOC_Os12g02570
Translocation	Chr8	4306960	Chr6	25086676
Translocation	Chr12	5179131	Chr8	15024737
Translocation	Chr11	6943607	Chr8	5173800	2
Translocation	Chr3	12146453	Chr1	1044051	LOC_Os03g21260
Translocation	Chr10	13683557	Chr5	5202153	LOC_Os10g26370
Translocation	Chr11	13733938	Chr10	8066933	2
Translocation	Chr5	13933298	Chr1	31269223
Translocation	Chr8	15765304	Chr3	15248053	2
Translocation	Chr11	16590731	Chr6	27543274	2
Translocation	Chr10	19646238	Chr3	12472563
Translocation	Chr10	19646239	Chr3	12472802
Translocation	Chr2	27133113	Chr1	25821321

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