Search Results
Mutant Information |
---|
Mutant Name | FN2298 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2298 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 29
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 2381520 | C-T | HET | ||
SBS | Chr1 | 20217971 | C-T | HET | ||
SBS | Chr1 | 32278598 | C-T | HET | ||
SBS | Chr2 | 4070477 | G-A | Homo | ||
SBS | Chr2 | 4137975 | G-A | Homo | ||
SBS | Chr2 | 11124163 | C-T | HET | ||
SBS | Chr2 | 11385050 | C-T | HET | ||
SBS | Chr2 | 16189086 | G-A | HET | ||
SBS | Chr2 | 20947889 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g34910 |
SBS | Chr2 | 23630107 | C-T | Homo | ||
SBS | Chr3 | 5496493 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g10770 |
SBS | Chr3 | 30348554 | A-G | HET | ||
SBS | Chr4 | 1464117 | T-C | HET | ||
SBS | Chr4 | 6778863 | G-A | HET | ||
SBS | Chr4 | 19589719 | A-G | HET | ||
SBS | Chr4 | 25090929 | T-A | HET | ||
SBS | Chr4 | 33349407 | G-T | HET | ||
SBS | Chr5 | 11912232 | C-T | Homo | ||
SBS | Chr5 | 24372414 | T-C | Homo | ||
SBS | Chr6 | 4667067 | T-A | HET | ||
SBS | Chr7 | 14121592 | G-A | HET | ||
SBS | Chr8 | 7372400 | T-A | HET | ||
SBS | Chr8 | 23114697 | G-C | HET | ||
SBS | Chr9 | 66545 | C-T | Homo | ||
SBS | Chr9 | 18362788 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g30170 |
SBS | Chr11 | 9056769 | C-T | Homo | ||
SBS | Chr11 | 18284911 | G-A | HET | ||
SBS | Chr11 | 27734860 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g45840 |
SBS | Chr12 | 19717377 | G-A | HET |
Deletions: 12
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr4 | 23014572 | 23014573 | 2 | |
Insertion | Chr11 | 16487482 | 16487485 | 4 | |
Insertion | Chr3 | 9570690 | 9570727 | 38 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 18117632 | 18992859 | 2 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 17928209 | Chr3 | 21440143 | |
Translocation | Chr8 | 18520001 | Chr6 | 14183430 | LOC_Os08g30120 |