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| Mutant Information |
|---|
| Mutant Name | FN2299 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2299 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16480645 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g29409 |
| SBS | Chr1 | 16480646 | C-T | HET | ||
| SBS | Chr1 | 21079068 | C-A | HET | ||
| SBS | Chr1 | 26428414 | G-A | Homo | ||
| SBS | Chr1 | 36781634 | G-A | HET | ||
| SBS | Chr10 | 15569016 | C-A | HET | ||
| SBS | Chr10 | 4020312 | T-A | HET | ||
| SBS | Chr11 | 11315442 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g19630 |
| SBS | Chr11 | 14744140 | G-A | Homo | ||
| SBS | Chr11 | 24564454 | G-T | HET | ||
| SBS | Chr12 | 21034528 | G-A | HET | ||
| SBS | Chr2 | 18902639 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g31980 |
| SBS | Chr2 | 26485119 | C-T | HET | ||
| SBS | Chr2 | 27712803 | C-T | HET | ||
| SBS | Chr2 | 27822416 | T-A | HET | ||
| SBS | Chr2 | 29243018 | C-T | HET | ||
| SBS | Chr2 | 6292674 | T-A | HET | ||
| SBS | Chr3 | 11483481 | T-A | HET | ||
| SBS | Chr3 | 16335083 | C-A | HET | ||
| SBS | Chr3 | 22634801 | A-T | HET | ||
| SBS | Chr3 | 9070902 | A-T | HET | ||
| SBS | Chr4 | 11176669 | G-C | HET | ||
| SBS | Chr4 | 15194640 | C-T | Homo | ||
| SBS | Chr4 | 25073444 | T-A | HET | ||
| SBS | Chr4 | 31137640 | G-A | Homo | ||
| SBS | Chr4 | 6071200 | C-A | HET | ||
| SBS | Chr5 | 14354152 | G-A | HET | ||
| SBS | Chr5 | 1490984 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g03520 |
| SBS | Chr5 | 6382909 | G-A | HET | ||
| SBS | Chr7 | 17054526 | G-A | Homo | ||
| SBS | Chr7 | 17471983 | C-T | Homo | ||
| SBS | Chr7 | 22760335 | C-T | Homo | ||
| SBS | Chr8 | 24766116 | T-A | Homo | ||
| SBS | Chr9 | 21419153 | G-A | HET | ||
| SBS | Chr9 | 5577660 | T-C | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 572821 | 572833 | 12 | |
| Deletion | Chr10 | 5681836 | 5681843 | 7 | |
| Deletion | Chr9 | 9932392 | 9932393 | 1 | |
| Deletion | Chr8 | 10714676 | 10714677 | 1 | |
| Deletion | Chr6 | 11606006 | 11606011 | 5 | |
| Deletion | Chr8 | 11836200 | 11836201 | 1 | |
| Deletion | Chr12 | 13063197 | 13063198 | 1 | |
| Deletion | Chr12 | 13367510 | 13367513 | 3 | LOC_Os12g23580 |
| Deletion | Chr9 | 22300493 | 22300498 | 5 | |
| Deletion | Chr8 | 23989033 | 23989038 | 5 | |
| Deletion | Chr11 | 25396001 | 25406000 | 9999 | 2 |
| Deletion | Chr11 | 25414001 | 25634000 | 219999 | 40 |
| Deletion | Chr11 | 25636001 | 25691000 | 54999 | 7 |
| Deletion | Chr11 | 25694001 | 25703000 | 8999 | LOC_Os11g42660 |
| Deletion | Chr11 | 25705001 | 25739000 | 33999 | 6 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 15041320 | 15041320 | 1 | |
| Insertion | Chr11 | 5493917 | 5493918 | 2 | |
| Insertion | Chr3 | 20536339 | 20536340 | 2 | |
| Insertion | Chr5 | 11965623 | 11965623 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 12430568 | 12585764 | LOC_Os03g21740 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 12549830 | Chr1 | 41233997 | 2 |
| Translocation | Chr11 | 17929403 | Chr4 | 11644308 | |
| Translocation | Chr12 | 19447633 | Chr1 | 23373052 | |
| Translocation | Chr11 | 28256119 | Chr2 | 13043193 | LOC_Os11g47030 |