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| Mutant Information |
|---|
| Mutant Name | FN2300 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2300 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1692662 | A-T | HET | ||
| SBS | Chr11 | 10073787 | A-C | HET | ||
| SBS | Chr11 | 8789056 | T-C | HET | ||
| SBS | Chr11 | 9670309 | T-C | HET | ||
| SBS | Chr12 | 25062617 | G-T | Homo | ||
| SBS | Chr12 | 6863228 | T-C | HET | ||
| SBS | Chr2 | 27515342 | C-A | HET | ||
| SBS | Chr2 | 5715176 | C-G | HET | ||
| SBS | Chr2 | 6675929 | G-C | HET | ||
| SBS | Chr3 | 16194536 | C-T | Homo | ||
| SBS | Chr3 | 21910480 | C-A | HET | ||
| SBS | Chr3 | 25664575 | A-T | HET | ||
| SBS | Chr4 | 16841488 | G-A | HET | ||
| SBS | Chr4 | 1718910 | T-C | HET | ||
| SBS | Chr4 | 20133521 | A-G | HET | ||
| SBS | Chr4 | 24893857 | T-G | HET | ||
| SBS | Chr5 | 25513621 | A-T | HET | ||
| SBS | Chr6 | 11761882 | T-C | Homo | ||
| SBS | Chr6 | 14049512 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g24050 |
| SBS | Chr6 | 25270530 | A-C | HET | ||
| SBS | Chr6 | 27812700 | C-T | HET | ||
| SBS | Chr7 | 10629091 | G-A | HET | ||
| SBS | Chr7 | 15900112 | G-A | HET | ||
| SBS | Chr7 | 8100571 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g14210 |
| SBS | Chr8 | 10078021 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g16460 |
| SBS | Chr8 | 10914721 | C-G | HET | ||
| SBS | Chr8 | 18783093 | G-A | HET | ||
| SBS | Chr8 | 18783095 | C-T | HET | ||
| SBS | Chr8 | 19887613 | C-G | HET | ||
| SBS | Chr9 | 13797702 | C-T | Homo | ||
| SBS | Chr9 | 22629983 | G-C | HET |
Deletions: 7
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 20273383 | 20273384 | 2 | |
| Insertion | Chr2 | 31844652 | 31844652 | 1 | |
| Insertion | Chr3 | 22475639 | 22475639 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 11106108 | 11107698 | LOC_Os01g19600 |
| Inversion | Chr1 | 11107707 | 11428989 | 2 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 3016134 | Chr4 | 1711426 | LOC_Os08g05640 |
| Translocation | Chr8 | 3016175 | Chr4 | 1711282 | LOC_Os08g05640 |
| Translocation | Chr11 | 8456858 | Chr7 | 15349367 | 2 |
| Translocation | Chr11 | 8457941 | Chr7 | 15349365 | 2 |
| Translocation | Chr12 | 9879044 | Chr10 | 327473 | |
| Translocation | Chr4 | 32281527 | Chr3 | 21730922 | 2 |