Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27623531	C-T	HET
SBS	Chr1	32743063	C-T	Homo
SBS	Chr1	41372828	C-A	Homo
SBS	Chr1	43024685	A-T	Homo
SBS	Chr10	7281936	C-T	HET	SPLICE_SITE_DONOR	LOC_Os10g13480
SBS	Chr11	3113673	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g06450
SBS	Chr11	4130671	C-T	Homo
SBS	Chr12	10164068	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g17750
SBS	Chr12	11966458	G-A	HET
SBS	Chr12	11981891	G-A	HET
SBS	Chr12	16672473	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g28220
SBS	Chr12	24679913	G-A	HET
SBS	Chr2	26021074	C-T	HET
SBS	Chr2	3971653	G-T	Homo
SBS	Chr3	19055486	G-A	HET
SBS	Chr4	5903368	C-T	HET
SBS	Chr5	25468751	G-C	HET
SBS	Chr6	10921592	C-G	HET
SBS	Chr6	16304035	T-C	HET
SBS	Chr6	1720009	A-T	HET
SBS	Chr6	2305149	G-T	HET
SBS	Chr6	24252468	C-A	HET
SBS	Chr6	25525109	G-A	HET
SBS	Chr6	8837859	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15600
SBS	Chr6	8837860	G-T	HET
SBS	Chr6	8837861	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15600
SBS	Chr6	9730038	C-T	HET
SBS	Chr7	21146439	G-T	Homo
SBS	Chr7	21146440	T-G	Homo
SBS	Chr7	22116173	C-T	Homo
SBS	Chr7	2246936	G-C	HET
SBS	Chr9	14138020	T-C	HET
SBS	Chr9	14971047	A-G	HET

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	763859	763860	1
Deletion	Chr10	2521433	2521434	1
Deletion	Chr1	2772742	2772754	12	LOC_Os01g05800
Deletion	Chr2	2781325	2781339	14
Deletion	Chr11	4113655	4113662	7
Deletion	Chr8	7215138	7215139	1
Deletion	Chr5	7254867	7254870	3
Deletion	Chr2	7376001	7394000	17999	2
Deletion	Chr3	9146672	9146689	17
Deletion	Chr2	11896038	11896053	15	LOC_Os02g20190
Deletion	Chr1	13886428	13886436	8
Deletion	Chr8	18337049	18337059	10
Deletion	Chr8	22880766	22880770	4	LOC_Os08g36320
Deletion	Chr3	23591036	23591039	3
Deletion	Chr11	24628391	24628404	13
Deletion	Chr5	25651431	25651433	2
Deletion	Chr8	28252777	28252787	10	LOC_Os08g45010
Deletion	Chr5	29263288	29263294	6
Deletion	Chr7	29340788	29340791	3
Deletion	Chr1	30348003	30348004	1	LOC_Os01g52750
Deletion	Chr4	30539060	30539062	2
Deletion	Chr4	34820758	34820774	16

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	2165624	2165625	2
Insertion	Chr2	23487792	23487801	10
Insertion	Chr6	10621509	10621509	1
Insertion	Chr6	12087061	12087062	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18437347	18527151	2
Inversion	Chr5	18437351	18527184	2
Inversion	Chr6	23830405	24269780	2
Inversion	Chr6	23830425	24269815	2
Inversion	Chr12	26463279	26463379

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	11423745	Chr4	9925175	LOC_Os05g19610
Translocation	Chr5	22194333	Chr3	23593651
Translocation	Chr5	22197979	Chr3	23592583	2

Main menu