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Mutant Information

Mutant Name	FN2310 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2310 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14524636	G-T	HET
SBS	Chr1	19928578	A-T	HET
SBS	Chr1	29496420	G-A	HET
SBS	Chr1	29637360	G-A	HET
SBS	Chr1	36294000	G-A	Homo
SBS	Chr1	8168293	T-A	Homo
SBS	Chr10	15374369	G-A	HET
SBS	Chr10	6791161	T-C	HET
SBS	Chr11	19794340	G-T	HET
SBS	Chr11	2097945	A-T	HET
SBS	Chr12	16534900	T-C	HET
SBS	Chr12	21260258	G-A	HET
SBS	Chr12	53570	C-T	HET
SBS	Chr2	14802054	A-G	HET
SBS	Chr2	1840026	C-T	HET
SBS	Chr2	19345531	C-A	Homo
SBS	Chr2	19675958	T-C	HET
SBS	Chr2	19917690	C-T	Homo
SBS	Chr2	20112803	G-T	Homo
SBS	Chr2	35734030	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g58430
SBS	Chr2	6592312	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g12630
SBS	Chr3	17957583	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g31520
SBS	Chr3	18632222	C-T	HET
SBS	Chr3	3115235	G-C	HET
SBS	Chr3	36204771	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g64070
SBS	Chr4	15502651	C-A	HET
SBS	Chr5	12270422	C-A	Homo
SBS	Chr5	14058897	C-T	Homo
SBS	Chr5	18775362	G-A	HET
SBS	Chr5	21511724	G-T	HET
SBS	Chr6	12723313	G-A	HET
SBS	Chr7	15905464	C-G	HET
SBS	Chr7	16207228	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g27770
SBS	Chr7	20356178	C-A	HET
SBS	Chr7	27352032	G-A	Homo
SBS	Chr9	14633705	C-T	Homo
SBS	Chr9	18299845	T-C	HET
SBS	Chr9	62718	T-C	HET
SBS	Chr9	9008240	C-A	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2082290	2082292	2
Deletion	Chr12	2098697	2098698	1
Deletion	Chr8	2899829	2899830	1
Deletion	Chr9	4735342	4735343	1
Deletion	Chr5	5523461	5523463	2	LOC_Os05g09736
Deletion	Chr1	6123390	6123391	1
Deletion	Chr3	7652399	7652405	6
Deletion	Chr12	8320007	8320011	4
Deletion	Chr4	10092927	10092932	5	LOC_Os04g18244
Deletion	Chr8	14073558	14073560	2	LOC_Os08g23310
Deletion	Chr7	16561356	16561375	19
Deletion	Chr11	17093400	17093407	7	LOC_Os11g29450
Deletion	Chr2	19871679	19871687	8
Deletion	Chr5	23864692	23864697	5
Deletion	Chr11	25123425	25123449	24
Deletion	Chr1	26345883	26345886	3
Deletion	Chr2	27902948	27902949	1
Deletion	Chr1	31616852	31616879	27
Deletion	Chr3	34841609	34841610	1	LOC_Os03g61390

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	10472225	10472225	1
Insertion	Chr10	2603536	2603536	1
Insertion	Chr11	5620482	5620486	5
Insertion	Chr12	12795238	12795238	1
Insertion	Chr5	11832070	11832070	1
Insertion	Chr8	21739267	21739269	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9480227	9501939
Inversion	Chr12	9480250	9501952
Inversion	Chr4	29509156	30289943
Inversion	Chr4	29509166	30289953
Inversion	Chr3	34986408	34986537	LOC_Os03g61720

Translocations: 135

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	858416	Chr11	815528	2
Translocation	Chr12	2109733	Chr9	9469239	2
Translocation	Chr12	2147144	Chr11	5073923
Translocation	Chr11	2153913	Chr9	8955408
Translocation	Chr11	2163974	Chr1	37409969
Translocation	Chr4	3220802	Chr2	19314573
Translocation	Chr12	3253819	Chr11	21096707	2
Translocation	Chr12	3699304	Chr4	9565765
Translocation	Chr7	3981617	Chr3	2616130	2
Translocation	Chr10	4089543	Chr6	14634242
Translocation	Chr10	4210026	Chr7	5465962
Translocation	Chr12	4416697	Chr8	18415250	2
Translocation	Chr9	5120596	Chr4	3943172	LOC_Os09g09500
Translocation	Chr11	5123058	Chr2	1945054	2
Translocation	Chr10	5623931	Chr6	8458367
Translocation	Chr12	5779287	Chr8	19753812
Translocation	Chr8	5977028	Chr3	2803169	2
Translocation	Chr6	5978743	Chr4	3687509	LOC_Os06g11370
Translocation	Chr12	6248354	Chr8	4190745
Translocation	Chr9	6282553	Chr4	5870526
Translocation	Chr12	6808366	Chr11	13095623
Translocation	Chr10	6900294	Chr5	2479642
Translocation	Chr9	7389118	Chr3	6343122
Translocation	Chr8	7455821	Chr2	16612646
Translocation	Chr12	7498166	Chr7	13571132	LOC_Os12g13400
Translocation	Chr12	7742402	Chr2	19414035	2
Translocation	Chr5	7847652	Chr3	23251985
Translocation	Chr10	8053110	Chr7	15100151	LOC_Os10g15210
Translocation	Chr3	8825038	Chr2	19352215
Translocation	Chr11	9355078	Chr8	9822301
Translocation	Chr12	9754251	Chr10	8039778
Translocation	Chr12	10087162	Chr8	21909928
Translocation	Chr6	10144060	Chr3	22322171
Translocation	Chr7	10511348	Chr6	11334670
Translocation	Chr11	10756223	Chr4	10128571	2
Translocation	Chr12	11561161	Chr2	29427397
Translocation	Chr9	11597072	Chr6	10212962
Translocation	Chr4	11694426	Chr3	12620075
Translocation	Chr9	11727109	Chr4	17810694	LOC_Os09g19610
Translocation	Chr9	12466633	Chr8	8352631	LOC_Os09g20700
Translocation	Chr12	12473328	Chr9	5559711
Translocation	Chr11	13169663	Chr9	2457129	2
Translocation	Chr11	13306791	Chr4	31987972	2
Translocation	Chr12	13371990	Chr10	16479593	LOC_Os12g23590
Translocation	Chr12	13373658	Chr4	12545924	2
Translocation	Chr8	13399778	Chr7	7949080	LOC_Os08g22210
Translocation	Chr9	13409018	Chr6	18842977	LOC_Os09g22150
Translocation	Chr11	13528941	Chr10	6141895	2
Translocation	Chr12	13614721	Chr7	6553016
Translocation	Chr8	13663382	Chr5	22889167
Translocation	Chr12	14086274	Chr8	10124017	2
Translocation	Chr12	14087109	Chr11	8944378	2
Translocation	Chr10	14392105	Chr6	13904099
Translocation	Chr8	14737228	Chr7	5214938
Translocation	Chr9	14795702	Chr7	5461185
Translocation	Chr12	14916315	Chr9	5569626	2
Translocation	Chr9	14951257	Chr1	37409863
Translocation	Chr12	14995788	Chr11	6169092	2
Translocation	Chr10	15557603	Chr4	15030259
Translocation	Chr7	15625895	Chr1	3307639
Translocation	Chr8	15901291	Chr4	7677717	2
Translocation	Chr12	16085337	Chr9	11362256	2
Translocation	Chr12	16204352	Chr4	3633936
Translocation	Chr8	16263154	Chr6	15882910	2
Translocation	Chr10	16394812	Chr9	19091217
Translocation	Chr6	16552093	Chr4	2748318	2
Translocation	Chr11	16694121	Chr7	9894221
Translocation	Chr9	16737773	Chr7	1125471	LOC_Os09g27540
Translocation	Chr8	16783131	Chr5	13970147	2
Translocation	Chr10	16821028	Chr1	41587176
Translocation	Chr9	16923207	Chr4	13705017	LOC_Os09g27810
Translocation	Chr12	16959285	Chr8	6751661
Translocation	Chr11	17158377	Chr10	22891075	LOC_Os11g29570
Translocation	Chr11	17701376	Chr8	24046280
Translocation	Chr7	18180329	Chr4	3889343	2
Translocation	Chr10	18189458	Chr9	1568515	2
Translocation	Chr12	18301853	Chr9	21567476	LOC_Os12g30490
Translocation	Chr9	18370188	Chr8	2960408
Translocation	Chr11	18371992	Chr10	879842	LOC_Os11g31440
Translocation	Chr11	18508356	Chr1	40950870
Translocation	Chr12	18521475	Chr9	1654382	LOC_Os12g30824
Translocation	Chr8	18745849	Chr3	18929781
Translocation	Chr11	19660583	Chr7	2719536	2
Translocation	Chr11	19843562	Chr1	19348796	LOC_Os11g33938
Translocation	Chr12	20096547	Chr6	23394909
Translocation	Chr12	20149124	Chr10	4958961	2
Translocation	Chr12	20153354	Chr11	14826899	2
Translocation	Chr12	20220322	Chr4	271747
Translocation	Chr6	20282799	Chr5	6098939
Translocation	Chr12	20331815	Chr8	17926417	2
Translocation	Chr4	20346294	Chr3	5807536
Translocation	Chr12	20507508	Chr1	33160323	LOC_Os12g33958
Translocation	Chr12	20507518	Chr6	4239147	LOC_Os12g33958
Translocation	Chr12	20542616	Chr1	37847717	2
Translocation	Chr12	21142573	Chr9	5132484
Translocation	Chr7	21174152	Chr4	8324312
Translocation	Chr6	21200642	Chr4	8543233
Translocation	Chr12	21494618	Chr11	17511560	LOC_Os12g35360
Translocation	Chr11	21589579	Chr7	7985056	2
Translocation	Chr12	21609233	Chr5	7138587	LOC_Os12g35540
Translocation	Chr12	21931774	Chr2	2418114
Translocation	Chr11	22131076	Chr6	15401537	LOC_Os11g37480
Translocation	Chr11	22180241	Chr5	16082507
Translocation	Chr11	22362487	Chr10	15002739
Translocation	Chr8	22364949	Chr2	19181603
Translocation	Chr10	22644007	Chr8	19750044	LOC_Os10g42100
Translocation	Chr4	22896135	Chr2	13397069	LOC_Os04g38530
Translocation	Chr11	23032332	Chr3	16389005
Translocation	Chr12	23226088	Chr9	10415104	2
Translocation	Chr12	23236491	Chr8	4010297	LOC_Os12g37830
Translocation	Chr12	23542986	Chr6	21994034
Translocation	Chr6	23608285	Chr2	20852147
Translocation	Chr12	23803684	Chr3	22077522
Translocation	Chr8	24365118	Chr2	24289050	2
Translocation	Chr12	24575513	Chr3	18534145
Translocation	Chr11	24830135	Chr10	20543868
Translocation	Chr8	25127054	Chr6	8619512	2
Translocation	Chr12	25194111	Chr8	11496200	2
Translocation	Chr4	25205774	Chr3	16530742
Translocation	Chr8	25261237	Chr7	14604277	2
Translocation	Chr7	25285592	Chr2	13402391
Translocation	Chr5	25539359	Chr1	40623925
Translocation	Chr12	25668908	Chr2	9937755
Translocation	Chr12	26482352	Chr8	1132862	2
Translocation	Chr12	27005780	Chr2	10461207
Translocation	Chr11	27569194	Chr5	16490292
Translocation	Chr5	27683279	Chr3	10462479	2
Translocation	Chr11	27688464	Chr5	23584240	2
Translocation	Chr7	27769966	Chr1	29676763
Translocation	Chr11	27820948	Chr5	23587093	2
Translocation	Chr11	27827436	Chr5	15902468
Translocation	Chr11	27831690	Chr7	3937360	LOC_Os11g45990
Translocation	Chr11	28408444	Chr9	408710	2
Translocation	Chr3	28717934	Chr2	6171094
Translocation	Chr11	28753002	Chr1	28104454

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