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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18974211	G-A	HET
SBS	Chr1	21831710	T-C	HET
SBS	Chr1	26646918	C-T	Homo
SBS	Chr1	26996560	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g47250
SBS	Chr1	41661178	A-C	HET
SBS	Chr2	23436209	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g38780
SBS	Chr2	26981972	T-A	HET
SBS	Chr3	19310341	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33780
SBS	Chr3	19430367	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g34096
SBS	Chr3	23534607	G-A	HET
SBS	Chr3	30367871	G-A	Homo
SBS	Chr4	28510946	C-A	HET
SBS	Chr4	33829488	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g56730
SBS	Chr4	33829489	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g56730
SBS	Chr5	8625559	G-A	HET
SBS	Chr5	13474042	C-T	HET
SBS	Chr5	26468612	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g45670
SBS	Chr6	4191661	A-G	Homo
SBS	Chr6	12420892	C-T	HET
SBS	Chr6	20975051	T-C	HET
SBS	Chr7	2874500	C-T	Homo
SBS	Chr8	7322360	T-C	HET
SBS	Chr8	16367810	T-C	HET
SBS	Chr8	18967891	C-A	HET
SBS	Chr8	24927907	G-A	HET
SBS	Chr8	26078573	G-T	Homo
SBS	Chr9	15971281	G-A	Homo
SBS	Chr9	18950984	C-T	HET
SBS	Chr10	5707048	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g10380
SBS	Chr10	13167537	G-A	HET
SBS	Chr11	14480752	G-A	Homo
SBS	Chr11	22459802	T-G	HET
SBS	Chr12	15113869	G-A	Homo
SBS	Chr12	15113870	G-A	Homo
SBS	Chr12	15591393	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g26620
SBS	Chr12	16865620	C-A	HET
SBS	Chr12	21210198	T-A	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2335196	2335205	9
Deletion	Chr2	4953467	4953478	11
Deletion	Chr1	7348658	7348661	3
Deletion	Chr8	10532666	10532675	9
Deletion	Chr6	12152716	12152718	2
Deletion	Chr6	12429119	12429122	3
Deletion	Chr4	12572306	12572310	4
Deletion	Chr8	12823670	12823680	10
Deletion	Chr3	12881950	12881952	2
Deletion	Chr3	19284023	19284024	1
Deletion	Chr10	21651387	21651394	7
Deletion	Chr2	21950271	21950282	11	LOC_Os02g36350
Deletion	Chr3	25148135	25148142	7	LOC_Os03g44670
Deletion	Chr11	25204922	25204923	1
Deletion	Chr5	25241201	25241204	3	LOC_Os05g43410
Deletion	Chr1	30255956	30255960	4
Deletion	Chr3	35966291	35966296	5	LOC_Os03g63670
Deletion	Chr1	38799864	38799866	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	23126868	23126869	2
Insertion	Chr9	15717592	15717593	2
Insertion	Chr1	5943189	5943194	6
Insertion	Chr8	13642396	13642396	1	LOC_Os08g22680
Insertion	Chr10	14007456	14007456	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	24402570	24402889

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3125971	Chr2	6297057
Translocation	Chr12	3125976	Chr2	6287632
Translocation	Chr11	5306763	Chr3	2887281	2
Translocation	Chr12	9917834	Chr4	6963416	LOC_Os12g17320
Translocation	Chr11	12810740	Chr5	8349927
Translocation	Chr9	15854008	Chr5	5571087	LOC_Os09g26240
Translocation	Chr11	20841018	Chr2	11244978
Translocation	Chr12	21962434	Chr11	17865899
Translocation	Chr12	22640883	Chr2	16126593
Translocation	Chr11	27806726	Chr6	9599988
Translocation	Chr11	27991856	Chr10	12685624	LOC_Os11g46230

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