Search Nipponbare


Mutant Information

Mutant NameFN2312 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2312 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 37
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr113174464C-THomo
SBSChr129092110C-THETNON_SYNONYMOUS_CODINGLOC_Os01g50650
SBSChr129623235C-THET
SBSChr129857391G-THET
SBSChr130892649T-GHET
SBSChr132492047G-AHET
SBSChr141469129T-AHomo
SBSChr141553853C-THomo
SBSChr17636120C-THETNON_SYNONYMOUS_CODINGLOC_Os01g13620
SBSChr1220323249T-AHomo
SBSChr1220875427C-THET
SBSChr123244478G-AHET
SBSChr219453763G-CHomo
SBSChr221748768C-THET
SBSChr224002827G-AHomo
SBSChr311698233G-AHomo
SBSChr311698234G-AHomo
SBSChr322714774G-AHomo
SBSChr411758014C-GHomoNON_SYNONYMOUS_CODINGLOC_Os04g20950
SBSChr412786188T-CHETNON_SYNONYMOUS_CODINGLOC_Os04g22580
SBSChr415482420G-AHomo
SBSChr48244012A-GHomoNON_SYNONYMOUS_CODINGLOC_Os04g14690
SBSChr510006890A-GHETNON_SYNONYMOUS_CODINGLOC_Os05g17430
SBSChr525520006G-AHET
SBSChr59242225G-AHET
SBSChr622323258T-CHET
SBSChr6583385C-THET
SBSChr715152568C-THomo
SBSChr73150426G-THomo
SBSChr74387452G-THET
SBSChr818416771C-THETNON_SYNONYMOUS_CODINGLOC_Os08g29980
SBSChr818860357T-CHETNON_SYNONYMOUS_CODINGLOC_Os08g30600
SBSChr86373682A-THET
SBSChr88247375G-AHET
SBSChr911073337G-THET
SBSChr95940176A-THomo
SBSChr95940178A-THomo

Deletions: 14
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr52027032027041LOC_Os05g01320
DeletionChr11250986925098745
DeletionChr7335009333500974
DeletionChr1418717441871751
DeletionChr114251373425138411
DeletionChr95935728593575123
DeletionChr10888363388836363
DeletionChr1210383813103838141LOC_Os12g18060
DeletionChr712229807122298081
DeletionChr914598536145985371
DeletionChr317314731173147321
DeletionChr1018840006188400071
DeletionChr619947778199477813
DeletionChr4256284972562850811LOC_Os04g43324

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr332760611327606122
InsertionChr716836657168366571LOC_Os07g28760image

No Inversion

Translocations: 11
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr111001717Chr2152928702
TranslocationChr114907894Chr476386062
TranslocationChr129132411Chr1131267622
TranslocationChr69456999Chr54740004
TranslocationChr910309860Chr41632054
TranslocationChr913620987Chr47872859
TranslocationChr1124207834Chr1011150143
TranslocationChr1124621858Chr896677662
TranslocationChr825261179Chr5188815922
TranslocationChr1225748408Chr4217685972
TranslocationChr1227019424Chr10216121782