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Mutant Information |
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Mutant Name | FN2312 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2312 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 37
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 13174464 | C-T | Homo | ||
SBS | Chr1 | 29092110 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g50650 |
SBS | Chr1 | 29623235 | C-T | HET | ||
SBS | Chr1 | 29857391 | G-T | HET | ||
SBS | Chr1 | 30892649 | T-G | HET | ||
SBS | Chr1 | 32492047 | G-A | HET | ||
SBS | Chr1 | 41469129 | T-A | Homo | ||
SBS | Chr1 | 41553853 | C-T | Homo | ||
SBS | Chr1 | 7636120 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g13620 |
SBS | Chr12 | 20323249 | T-A | Homo | ||
SBS | Chr12 | 20875427 | C-T | HET | ||
SBS | Chr12 | 3244478 | G-A | HET | ||
SBS | Chr2 | 19453763 | G-C | Homo | ||
SBS | Chr2 | 21748768 | C-T | HET | ||
SBS | Chr2 | 24002827 | G-A | Homo | ||
SBS | Chr3 | 11698233 | G-A | Homo | ||
SBS | Chr3 | 11698234 | G-A | Homo | ||
SBS | Chr3 | 22714774 | G-A | Homo | ||
SBS | Chr4 | 11758014 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g20950 |
SBS | Chr4 | 12786188 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g22580 |
SBS | Chr4 | 15482420 | G-A | Homo | ||
SBS | Chr4 | 8244012 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g14690 |
SBS | Chr5 | 10006890 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g17430 |
SBS | Chr5 | 25520006 | G-A | HET | ||
SBS | Chr5 | 9242225 | G-A | HET | ||
SBS | Chr6 | 22323258 | T-C | HET | ||
SBS | Chr6 | 583385 | C-T | HET | ||
SBS | Chr7 | 15152568 | C-T | Homo | ||
SBS | Chr7 | 3150426 | G-T | Homo | ||
SBS | Chr7 | 4387452 | G-T | HET | ||
SBS | Chr8 | 18416771 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g29980 |
SBS | Chr8 | 18860357 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g30600 |
SBS | Chr8 | 6373682 | A-T | HET | ||
SBS | Chr8 | 8247375 | G-A | HET | ||
SBS | Chr9 | 11073337 | G-T | HET | ||
SBS | Chr9 | 5940176 | A-T | Homo | ||
SBS | Chr9 | 5940178 | A-T | Homo |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 202703 | 202704 | 1 | LOC_Os05g01320 |
Deletion | Chr11 | 2509869 | 2509874 | 5 | |
Deletion | Chr7 | 3350093 | 3350097 | 4 | |
Deletion | Chr1 | 4187174 | 4187175 | 1 | |
Deletion | Chr11 | 4251373 | 4251384 | 11 | |
Deletion | Chr9 | 5935728 | 5935751 | 23 | |
Deletion | Chr10 | 8883633 | 8883636 | 3 | |
Deletion | Chr12 | 10383813 | 10383814 | 1 | LOC_Os12g18060 |
Deletion | Chr7 | 12229807 | 12229808 | 1 | |
Deletion | Chr9 | 14598536 | 14598537 | 1 | |
Deletion | Chr3 | 17314731 | 17314732 | 1 | |
Deletion | Chr10 | 18840006 | 18840007 | 1 | |
Deletion | Chr6 | 19947778 | 19947781 | 3 | |
Deletion | Chr4 | 25628497 | 25628508 | 11 | LOC_Os04g43324 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr3 | 32760611 | 32760612 | 2 | |
Insertion | Chr7 | 16836657 | 16836657 | 1 | LOC_Os07g28760![]() |
No Inversion
Translocations: 11
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 1001717 | Chr2 | 15292870 | 2 |
Translocation | Chr11 | 4907894 | Chr4 | 7638606 | 2 |
Translocation | Chr12 | 9132411 | Chr11 | 3126762 | 2 |
Translocation | Chr6 | 9456999 | Chr5 | 4740004 | |
Translocation | Chr9 | 10309860 | Chr4 | 1632054 | |
Translocation | Chr9 | 13620987 | Chr4 | 7872859 | |
Translocation | Chr11 | 24207834 | Chr10 | 11150143 | |
Translocation | Chr11 | 24621858 | Chr8 | 9667766 | 2 |
Translocation | Chr8 | 25261179 | Chr5 | 18881592 | 2 |
Translocation | Chr12 | 25748408 | Chr4 | 21768597 | 2 |
Translocation | Chr12 | 27019424 | Chr10 | 21612178 | 2 |