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| Mutant Information |
|---|
| Mutant Name | FN2315 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2315 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1133777 | A-C | HET | ||
| SBS | Chr1 | 18803689 | A-G | HET | ||
| SBS | Chr1 | 19027471 | C-T | HET | ||
| SBS | Chr1 | 36853262 | G-T | HET | ||
| SBS | Chr1 | 40822220 | C-T | Homo | ||
| SBS | Chr1 | 41813039 | A-C | Homo | ||
| SBS | Chr10 | 6805367 | C-T | HET | ||
| SBS | Chr11 | 14715215 | G-A | HET | ||
| SBS | Chr11 | 18611516 | T-C | HET | ||
| SBS | Chr11 | 8802019 | G-A | HET | ||
| SBS | Chr12 | 12796216 | T-C | HET | ||
| SBS | Chr2 | 10025723 | A-G | HET | ||
| SBS | Chr2 | 12328539 | G-A | HET | ||
| SBS | Chr2 | 32907677 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g53740 |
| SBS | Chr2 | 698495 | G-A | Homo | ||
| SBS | Chr3 | 35218920 | T-G | HET | ||
| SBS | Chr4 | 13940221 | A-T | HET | ||
| SBS | Chr4 | 26062306 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g43970 |
| SBS | Chr4 | 5580926 | C-T | HET | ||
| SBS | Chr5 | 6253503 | A-T | Homo | ||
| SBS | Chr7 | 17603801 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g29910 |
| SBS | Chr7 | 17603802 | C-T | Homo | ||
| SBS | Chr7 | 17603803 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g29910 |
| SBS | Chr8 | 16121809 | G-C | HET | ||
| SBS | Chr8 | 7713684 | T-A | HET | ||
| SBS | Chr9 | 13986173 | G-A | HET | ||
| SBS | Chr9 | 22416680 | A-T | Homo | ||
| SBS | Chr9 | 8367636 | A-C | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 7979479 | 7979481 | 2 | |
| Deletion | Chr1 | 8139965 | 8139966 | 1 | |
| Deletion | Chr7 | 8640001 | 8650000 | 9999 | 2 |
| Deletion | Chr4 | 9071198 | 9071199 | 1 | |
| Deletion | Chr9 | 9843816 | 9843838 | 22 | LOC_Os09g16140 |
| Deletion | Chr11 | 10095931 | 10095932 | 1 | |
| Deletion | Chr11 | 10285212 | 10285218 | 6 | LOC_Os11g18240 |
| Deletion | Chr6 | 16760304 | 16760307 | 3 | |
| Deletion | Chr12 | 18184289 | 18184294 | 5 | |
| Deletion | Chr2 | 19581981 | 19581986 | 5 | |
| Deletion | Chr11 | 22607579 | 22607582 | 3 | |
| Deletion | Chr4 | 23667291 | 23667292 | 1 | LOC_Os04g39710 |
| Deletion | Chr1 | 24285518 | 24285523 | 5 | |
| Deletion | Chr1 | 32149656 | 32149659 | 3 | |
| Deletion | Chr1 | 36823969 | 36823987 | 18 |
Insertions: 5
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 2088249 | 2752992 | LOC_Os02g04660 |
| Inversion | Chr2 | 2088253 | 2753004 | LOC_Os02g04660 |
| Inversion | Chr7 | 8579481 | 8639649 | 2 |
| Inversion | Chr7 | 8579494 | 8650120 | |
| Inversion | Chr4 | 21062152 | 21082485 | |
| Inversion | Chr4 | 21062168 | 21082496 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 3058469 | Chr4 | 19046820 | 2 |
| Translocation | Chr11 | 3058501 | Chr4 | 19046796 | 2 |
| Translocation | Chr12 | 12833885 | Chr2 | 2487079 | 2 |
| Translocation | Chr8 | 14590431 | Chr3 | 9391871 | |
| Translocation | Chr5 | 18580887 | Chr1 | 7861353 | |
| Translocation | Chr4 | 19046820 | Chr2 | 21405083 | LOC_Os04g31804 |
| Translocation | Chr12 | 20668445 | Chr11 | 7096393 | LOC_Os12g34104 |