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| Mutant Information |
|---|
| Mutant Name | FN2316 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2316 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10074095 | C-A | HET | STOP_GAINED | LOC_Os01g18000 |
| SBS | Chr1 | 24775480 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g43340 |
| SBS | Chr1 | 34366074 | C-T | Homo | ||
| SBS | Chr1 | 42525835 | C-T | HET | ||
| SBS | Chr10 | 18352161 | C-A | Homo | ||
| SBS | Chr10 | 18941317 | C-T | Homo | ||
| SBS | Chr10 | 38987 | C-T | HET | ||
| SBS | Chr10 | 4523066 | G-C | HET | ||
| SBS | Chr10 | 4523067 | C-A | HET | ||
| SBS | Chr11 | 11742932 | G-C | HET | ||
| SBS | Chr11 | 9256003 | G-A | HET | ||
| SBS | Chr2 | 18530418 | G-A | Homo | ||
| SBS | Chr2 | 20876841 | T-A | Homo | ||
| SBS | Chr3 | 18041215 | C-T | HET | ||
| SBS | Chr3 | 29635876 | G-A | Homo | ||
| SBS | Chr3 | 32364484 | C-T | Homo | ||
| SBS | Chr3 | 3716575 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g07300 |
| SBS | Chr4 | 18945768 | T-C | HET | ||
| SBS | Chr5 | 4110831 | G-T | HET | ||
| SBS | Chr6 | 14035538 | T-C | Homo | ||
| SBS | Chr6 | 14457669 | G-A | Homo | ||
| SBS | Chr6 | 2075127 | T-A | HET | ||
| SBS | Chr7 | 18008446 | G-A | HET | ||
| SBS | Chr7 | 5732855 | G-T | Homo | ||
| SBS | Chr8 | 16769101 | T-C | Homo | ||
| SBS | Chr9 | 12766809 | C-T | HET | ||
| SBS | Chr9 | 14335029 | C-T | Homo | ||
| SBS | Chr9 | 16172846 | G-T | Homo | ||
| SBS | Chr9 | 2220454 | C-T | HET | ||
| SBS | Chr9 | 5335697 | T-C | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 462022 | 462024 | 2 | |
| Deletion | Chr12 | 4447360 | 4447367 | 7 | |
| Deletion | Chr7 | 4558188 | 4558192 | 4 | LOC_Os07g08820 |
| Deletion | Chr11 | 4892796 | 4892798 | 2 | LOC_Os11g09150 |
| Deletion | Chr7 | 7079964 | 7079968 | 4 | LOC_Os07g12410 |
| Deletion | Chr4 | 8392088 | 8392089 | 1 | |
| Deletion | Chr11 | 10307058 | 10307063 | 5 | |
| Deletion | Chr3 | 11682101 | 11682105 | 4 | |
| Deletion | Chr6 | 11823255 | 11823256 | 1 | |
| Deletion | Chr4 | 15251727 | 15251731 | 4 | |
| Deletion | Chr10 | 20747881 | 20747894 | 13 | |
| Deletion | Chr4 | 21452631 | 21452632 | 1 | LOC_Os04g35280 |
| Deletion | Chr3 | 21496072 | 21496095 | 23 | |
| Deletion | Chr7 | 21834537 | 21834538 | 1 | |
| Deletion | Chr5 | 24725679 | 24725680 | 1 | LOC_Os05g42270 |
| Deletion | Chr1 | 26561727 | 26561739 | 12 | |
| Deletion | Chr3 | 27661280 | 27661304 | 24 | |
| Deletion | Chr11 | 27698093 | 27698107 | 14 | |
| Deletion | Chr3 | 31616001 | 31643000 | 26999 | 2 |
Insertions: 5
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 28163126 | 28163360 | LOC_Os08g44840 |
| Inversion | Chr3 | 35314492 | 35568909 | LOC_Os03g62340 |
| Inversion | Chr3 | 35314494 | 35568908 | LOC_Os03g62340 |
| Inversion | Chr1 | 39419776 | 39420083 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 1618723 | Chr2 | 19425708 | |
| Translocation | Chr10 | 1618729 | Chr2 | 19425969 | |
| Translocation | Chr4 | 10542849 | Chr1 | 12168091 | 2 |
| Translocation | Chr10 | 22789988 | Chr9 | 1626371 | LOC_Os10g42340 |