Search Results
| Mutant Information |
|---|
| Mutant Name | FN2317 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2317 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27166096 | A-T | HET | ||
| SBS | Chr1 | 27468759 | G-C | Homo | ||
| SBS | Chr1 | 41060836 | C-T | HET | ||
| SBS | Chr2 | 4053433 | C-T | HET | ||
| SBS | Chr2 | 20255043 | G-A | HET | ||
| SBS | Chr2 | 26392004 | C-T | HET | ||
| SBS | Chr2 | 26610283 | G-A | HET | ||
| SBS | Chr2 | 33145907 | C-G | HET | ||
| SBS | Chr2 | 33145908 | T-C | HET | ||
| SBS | Chr3 | 9052380 | C-T | HET | ||
| SBS | Chr3 | 16555232 | G-A | Homo | ||
| SBS | Chr3 | 27297760 | G-A | HET | ||
| SBS | Chr3 | 29412601 | C-T | HET | ||
| SBS | Chr4 | 4797987 | C-T | HET | ||
| SBS | Chr4 | 5910891 | T-C | HET | ||
| SBS | Chr4 | 12961490 | T-C | HET | ||
| SBS | Chr5 | 6001865 | C-T | HET | ||
| SBS | Chr5 | 13684203 | T-A | Homo | STOP_GAINED | LOC_Os05g23810 |
| SBS | Chr5 | 21731159 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g37180 |
| SBS | Chr5 | 21732040 | C-T | Homo | ||
| SBS | Chr6 | 2689359 | T-A | HET | ||
| SBS | Chr6 | 4684129 | A-C | Homo | ||
| SBS | Chr7 | 18226425 | G-A | Homo | ||
| SBS | Chr7 | 20906054 | G-A | HET | ||
| SBS | Chr8 | 19414984 | T-A | Homo | ||
| SBS | Chr9 | 8362256 | G-A | Homo | ||
| SBS | Chr10 | 390456 | T-A | HET | ||
| SBS | Chr10 | 8504306 | G-A | Homo | ||
| SBS | Chr10 | 9022783 | C-T | HET | ||
| SBS | Chr10 | 11663409 | C-T | Homo | ||
| SBS | Chr10 | 12407415 | C-T | Homo | ||
| SBS | Chr11 | 1676473 | C-T | HET | ||
| SBS | Chr11 | 8271494 | C-A | HET | ||
| SBS | Chr11 | 8885993 | A-G | HET | ||
| SBS | Chr11 | 11179822 | G-A | Homo | ||
| SBS | Chr11 | 23922724 | C-T | HET | ||
| SBS | Chr12 | 3006839 | A-T | HET | ||
| SBS | Chr12 | 3256840 | T-G | HET | ||
| SBS | Chr12 | 10191097 | T-G | HET | ||
| SBS | Chr12 | 20231143 | T-G | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 5365473 | 5365484 | 11 | |
| Deletion | Chr5 | 7687279 | 7687280 | 1 | |
| Deletion | Chr6 | 9207042 | 9207062 | 20 | |
| Deletion | Chr11 | 12828951 | 12828952 | 1 | |
| Deletion | Chr5 | 15367859 | 15367860 | 1 | |
| Deletion | Chr12 | 17109442 | 17109443 | 1 | |
| Deletion | Chr9 | 17777305 | 17777313 | 8 | LOC_Os09g29284 |
| Deletion | Chr5 | 21641867 | 21641875 | 8 | |
| Deletion | Chr6 | 21795256 | 21795261 | 5 | |
| Deletion | Chr3 | 22211369 | 22211391 | 22 | |
| Deletion | Chr2 | 25923001 | 25975000 | 51999 | 9 |
| Deletion | Chr4 | 26885159 | 26885160 | 1 | |
| Deletion | Chr2 | 31828751 | 31828755 | 4 | LOC_Os02g51980 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 5117189 | 5117190 | 2 | |
| Insertion | Chr8 | 3232481 | 3232483 | 3 |
No Inversion
Translocations: 27
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 630698 | Chr5 | 25587965 | LOC_Os06g02120 |
| Translocation | Chr9 | 2319004 | Chr2 | 16818244 | LOC_Os09g04380 |
| Translocation | Chr7 | 3115663 | Chr4 | 35487176 | LOC_Os07g06420 |
| Translocation | Chr12 | 3653304 | Chr9 | 6641953 | |
| Translocation | Chr9 | 4757291 | Chr5 | 5134646 | 2 |
| Translocation | Chr11 | 6225525 | Chr5 | 16255670 | 2 |
| Translocation | Chr12 | 6981597 | Chr3 | 2404419 | 2 |
| Translocation | Chr7 | 9387189 | Chr4 | 20072514 | |
| Translocation | Chr12 | 10104643 | Chr4 | 2691991 | 2 |
| Translocation | Chr12 | 10779849 | Chr2 | 19373249 | |
| Translocation | Chr10 | 10976659 | Chr7 | 10616873 | |
| Translocation | Chr12 | 13936898 | Chr4 | 16502356 | LOC_Os12g24420 |
| Translocation | Chr12 | 14446742 | Chr2 | 8932767 | |
| Translocation | Chr8 | 15018086 | Chr6 | 11963467 | |
| Translocation | Chr8 | 15958057 | Chr2 | 610890 | 2 |
| Translocation | Chr11 | 17890250 | Chr9 | 4630672 | |
| Translocation | Chr11 | 18033977 | Chr1 | 31269142 | |
| Translocation | Chr12 | 18708372 | Chr10 | 3149274 | |
| Translocation | Chr12 | 20935712 | Chr2 | 10797475 | |
| Translocation | Chr10 | 21106534 | Chr4 | 14888754 | LOC_Os10g39510 |
| Translocation | Chr12 | 21257844 | Chr10 | 16395158 | |
| Translocation | Chr12 | 22799917 | Chr4 | 18886094 | LOC_Os12g37180 |
| Translocation | Chr8 | 25008619 | Chr6 | 5168985 | |
| Translocation | Chr5 | 25539246 | Chr1 | 40624417 | |
| Translocation | Chr11 | 27311386 | Chr4 | 20036672 | |
| Translocation | Chr11 | 28165871 | Chr6 | 26697351 | |
| Translocation | Chr11 | 28430489 | Chr8 | 5481973 | LOC_Os11g47278 |