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| Mutant Information |
|---|
| Mutant Name | FN2318 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2318 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26135947 | C-A | HET | ||
| SBS | Chr1 | 26381098 | G-C | HET | ||
| SBS | Chr1 | 35024429 | C-T | HET | STOP_GAINED | LOC_Os01g60580 |
| SBS | Chr1 | 6234434 | C-T | Homo | ||
| SBS | Chr10 | 15822787 | A-G | HET | ||
| SBS | Chr11 | 11492922 | G-A | HET | ||
| SBS | Chr12 | 11912859 | A-G | HET | ||
| SBS | Chr12 | 14502788 | C-T | HET | ||
| SBS | Chr12 | 20325124 | A-T | HET | ||
| SBS | Chr2 | 25150731 | G-T | HET | ||
| SBS | Chr3 | 20792213 | A-G | Homo | ||
| SBS | Chr3 | 23123639 | G-A | Homo | ||
| SBS | Chr3 | 23793242 | T-C | HET | ||
| SBS | Chr3 | 28043010 | G-A | Homo | ||
| SBS | Chr3 | 32063666 | G-T | Homo | ||
| SBS | Chr4 | 11328162 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g20270 |
| SBS | Chr4 | 21432152 | C-T | HET | ||
| SBS | Chr4 | 3305851 | G-A | HET | ||
| SBS | Chr5 | 1174285 | T-C | HET | ||
| SBS | Chr5 | 15180785 | C-T | HET | ||
| SBS | Chr6 | 1905023 | A-T | HET | ||
| SBS | Chr6 | 21307241 | G-A | Homo | ||
| SBS | Chr6 | 9192320 | C-T | HET | ||
| SBS | Chr8 | 27128619 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g42920 |
| SBS | Chr8 | 9065556 | A-T | HET | ||
| SBS | Chr9 | 20359911 | T-C | HET | ||
| SBS | Chr9 | 8234491 | G-T | HET | ||
| SBS | Chr9 | 8234494 | A-T | HET |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1784053 | 1784055 | 2 | |
| Deletion | Chr10 | 2734920 | 2734928 | 8 | |
| Deletion | Chr1 | 3672239 | 3672240 | 1 | LOC_Os01g07630 |
| Deletion | Chr7 | 4275036 | 4275038 | 2 | |
| Deletion | Chr6 | 6453061 | 6453066 | 5 | |
| Deletion | Chr11 | 7622075 | 7622082 | 7 | |
| Deletion | Chr7 | 7686211 | 7686213 | 2 | |
| Deletion | Chr4 | 11328128 | 11328151 | 23 | LOC_Os04g20270 |
| Deletion | Chr11 | 12301248 | 12301414 | 166 | |
| Deletion | Chr5 | 15486001 | 15614000 | 127999 | 23 |
| Deletion | Chr5 | 15635001 | 15711000 | 75999 | 8 |
| Deletion | Chr12 | 16864911 | 16864916 | 5 | |
| Deletion | Chr1 | 16978784 | 16978785 | 1 | |
| Deletion | Chr4 | 23264639 | 23264652 | 13 | |
| Deletion | Chr8 | 25978462 | 25978466 | 4 | |
| Deletion | Chr5 | 26560235 | 26560241 | 6 | |
| Deletion | Chr3 | 29154415 | 29154423 | 8 | |
| Deletion | Chr2 | 32777202 | 32777204 | 2 | |
| Deletion | Chr3 | 33551779 | 33551780 | 1 | |
| Deletion | Chr1 | 42291040 | 42291041 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 11635650 | 11635650 | 1 | |
| Insertion | Chr2 | 715250 | 715251 | 2 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 986546 | Chr4 | 20112251 | |
| Translocation | Chr7 | 28216500 | Chr4 | 17793219 | LOC_Os07g47201 |