Search Nipponbare
Mutant Information |
---|
Mutant Name | FN2320 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2320 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
---|
Single base substitutions: 44
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr10 | 12387170 | G-A | HET | ||
SBS | Chr10 | 7469532 | C-T | Homo | ||
SBS | Chr11 | 5573370 | A-G | HET | ||
SBS | Chr11 | 8397417 | G-A | Homo | ||
SBS | Chr12 | 20288992 | G-C | HET | ||
SBS | Chr12 | 26824454 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g43220 |
SBS | Chr12 | 4890798 | A-C | Homo | ||
SBS | Chr12 | 4914226 | T-A | Homo | ||
SBS | Chr2 | 22260115 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g36880 |
SBS | Chr2 | 7598162 | T-C | HET | ||
SBS | Chr3 | 17647686 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g30980 |
SBS | Chr3 | 19556121 | C-A | HET | ||
SBS | Chr3 | 22632800 | C-T | Homo | ||
SBS | Chr3 | 22809765 | G-A | Homo | ||
SBS | Chr3 | 27054328 | T-A | Homo | ||
SBS | Chr4 | 15429745 | C-T | HET | ||
SBS | Chr4 | 16334939 | C-A | Homo | ||
SBS | Chr4 | 16334942 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g27630 |
SBS | Chr4 | 22371478 | G-A | Homo | ||
SBS | Chr4 | 25105591 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g42420 |
SBS | Chr4 | 26694957 | C-T | HET | ||
SBS | Chr4 | 34563303 | T-A | HET | ||
SBS | Chr4 | 6586004 | G-A | Homo | ||
SBS | Chr5 | 14160936 | G-T | HET | ||
SBS | Chr5 | 16844743 | G-T | HET | ||
SBS | Chr5 | 18472110 | A-G | Homo | ||
SBS | Chr5 | 19811970 | T-A | Homo | ||
SBS | Chr5 | 27167802 | G-A | HET | ||
SBS | Chr6 | 16960515 | G-A | Homo | ||
SBS | Chr6 | 21774723 | C-A | Homo | ||
SBS | Chr6 | 24746616 | T-A | HET | ||
SBS | Chr7 | 13947360 | T-G | HET | ||
SBS | Chr7 | 16511254 | T-C | HET | ||
SBS | Chr7 | 2790267 | G-A | HET | ||
SBS | Chr7 | 27937684 | G-T | Homo | ||
SBS | Chr7 | 4117770 | G-A | HET | ||
SBS | Chr7 | 6065753 | C-T | HET | ||
SBS | Chr7 | 754605 | T-G | HET | ||
SBS | Chr8 | 17548922 | C-T | HET | ||
SBS | Chr8 | 19543553 | C-T | HET | ||
SBS | Chr8 | 22492807 | G-T | HET | ||
SBS | Chr8 | 22492808 | C-T | HET | ||
SBS | Chr9 | 18908655 | C-T | HET | ||
SBS | Chr9 | 4969499 | A-G | Homo |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 4187427 | 4187433 | 6 | |
Deletion | Chr12 | 5199101 | 5199102 | 1 | LOC_Os12g09820 |
Deletion | Chr3 | 6147598 | 6147603 | 5 | |
Deletion | Chr10 | 7808684 | 7808699 | 15 | |
Deletion | Chr2 | 8331371 | 8331372 | 1 | |
Deletion | Chr3 | 11886239 | 11886247 | 8 | |
Deletion | Chr1 | 11990549 | 11990562 | 13 | |
Deletion | Chr8 | 17878227 | 17878308 | 81 | |
Deletion | Chr11 | 20236026 | 20236027 | 1 | |
Deletion | Chr2 | 26135121 | 26135128 | 7 | |
Deletion | Chr11 | 26519487 | 26519494 | 7 | |
Deletion | Chr3 | 27799147 | 27799148 | 1 | |
Deletion | Chr4 | 30201001 | 30277000 | 75999 | 11 |
Deletion | Chr4 | 30805690 | 30805692 | 2 | LOC_Os04g51920 |
Deletion | Chr2 | 30837798 | 30837799 | 1 |
Insertions: 5
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 10987565 | 11259794 | 2 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 13184620 | Chr5 | 26293775 | 2 |
Translocation | Chr12 | 13187270 | Chr5 | 26293786 | 2 |
Translocation | Chr11 | 13474800 | Chr9 | 3412368 | 2 |
Translocation | Chr4 | 23937271 | Chr1 | 15268801 |