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Mutant Information

Mutant NameFN2320 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2320 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 44
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr1012387170G-AHET
SBSChr107469532C-THomo
SBSChr115573370A-GHET
SBSChr118397417G-AHomo
SBSChr1220288992G-CHET
SBSChr1226824454C-THETNON_SYNONYMOUS_CODINGLOC_Os12g43220
SBSChr124890798A-CHomo
SBSChr124914226T-AHomo
SBSChr222260115C-THomoNON_SYNONYMOUS_CODINGLOC_Os02g36880
SBSChr27598162T-CHET
SBSChr317647686C-AHomoNON_SYNONYMOUS_CODINGLOC_Os03g30980
SBSChr319556121C-AHET
SBSChr322632800C-THomo
SBSChr322809765G-AHomo
SBSChr327054328T-AHomo
SBSChr415429745C-THET
SBSChr416334939C-AHomo
SBSChr416334942C-AHomoNON_SYNONYMOUS_CODINGLOC_Os04g27630
SBSChr422371478G-AHomo
SBSChr425105591G-AHETNON_SYNONYMOUS_CODINGLOC_Os04g42420
SBSChr426694957C-THET
SBSChr434563303T-AHET
SBSChr46586004G-AHomo
SBSChr514160936G-THET
SBSChr516844743G-THET
SBSChr518472110A-GHomo
SBSChr519811970T-AHomo
SBSChr527167802G-AHET
SBSChr616960515G-AHomo
SBSChr621774723C-AHomo
SBSChr624746616T-AHET
SBSChr713947360T-GHET
SBSChr716511254T-CHET
SBSChr72790267G-AHET
SBSChr727937684G-THomo
SBSChr74117770G-AHET
SBSChr76065753C-THET
SBSChr7754605T-GHET
SBSChr817548922C-THET
SBSChr819543553C-THET
SBSChr822492807G-THET
SBSChr822492808C-THET
SBSChr918908655C-THET
SBSChr94969499A-GHomo

Deletions: 15
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr2418742741874336
DeletionChr12519910151991021LOC_Os12g09820
DeletionChr3614759861476035
DeletionChr107808684780869915
DeletionChr2833137183313721
DeletionChr311886239118862478
DeletionChr1119905491199056213
DeletionChr8178782271787830881
DeletionChr1120236026202360271
DeletionChr226135121261351287
DeletionChr1126519487265194947
DeletionChr327799147277991481
DeletionChr430201001302770007599911
DeletionChr430805690308056922LOC_Os04g51920
DeletionChr230837798308377991

Insertions: 5
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr11255500825550092
InsertionChr232819938328199381
InsertionChr324787286247872861
InsertionChr4319164431916452
InsertionChr6228989222898932

Inversions: 1
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr810987565112597942

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr1213184620Chr5262937752
TranslocationChr1213187270Chr5262937862
TranslocationChr1113474800Chr934123682
TranslocationChr423937271Chr115268801