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| Mutant Information |
|---|
| Mutant Name | FN2321 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2321 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27967492 | G-T | Homo | ||
| SBS | Chr1 | 3619462 | G-A | Homo | ||
| SBS | Chr1 | 41323697 | C-T | Homo | ||
| SBS | Chr1 | 6600669 | C-A | Homo | ||
| SBS | Chr2 | 13459195 | A-G | Homo | ||
| SBS | Chr2 | 31248725 | A-G | HET | ||
| SBS | Chr3 | 19163648 | G-T | HET | ||
| SBS | Chr3 | 25125935 | C-T | Homo | ||
| SBS | Chr4 | 7500245 | T-C | HET | ||
| SBS | Chr5 | 29500625 | T-A | Homo | ||
| SBS | Chr5 | 9810205 | G-A | HET | ||
| SBS | Chr6 | 15625323 | C-T | Homo | ||
| SBS | Chr6 | 26578081 | T-A | HET | ||
| SBS | Chr7 | 12768459 | A-T | HET | ||
| SBS | Chr7 | 12768460 | A-T | HET | ||
| SBS | Chr7 | 14635362 | T-C | HET | ||
| SBS | Chr7 | 26718706 | T-C | HET | ||
| SBS | Chr7 | 6543809 | A-G | Homo | ||
| SBS | Chr8 | 26596168 | G-A | HET | ||
| SBS | Chr8 | 3756870 | C-T | HET | ||
| SBS | Chr9 | 11649295 | G-A | HET | ||
| SBS | Chr9 | 18165393 | G-A | HET | ||
| SBS | Chr9 | 3072793 | C-T | HET | ||
| SBS | Chr9 | 835180 | A-G | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 3112163 | 3112164 | 1 | |
| Deletion | Chr9 | 15605024 | 15605029 | 5 | |
| Deletion | Chr10 | 15830038 | 15830051 | 13 | |
| Deletion | Chr6 | 16775155 | 16775156 | 1 | LOC_Os06g29350 |
| Deletion | Chr10 | 17740240 | 17740247 | 7 | |
| Deletion | Chr9 | 19080882 | 19080899 | 17 | |
| Deletion | Chr12 | 21339325 | 21339333 | 8 | |
| Deletion | Chr4 | 22489001 | 22523000 | 33999 | 4 |
| Deletion | Chr6 | 27739001 | 27771000 | 31999 | 4 |
| Deletion | Chr1 | 32424104 | 32424108 | 4 | |
| Deletion | Chr2 | 34723665 | 34723667 | 2 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 19759632 | 19759632 | 1 |
Inversions: 10
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 5033120 | 5115044 | LOC_Os10g09310 |
| Inversion | Chr10 | 5033128 | 5115042 | LOC_Os10g09310 |
| Inversion | Chr4 | 9921657 | 9924627 | |
| Inversion | Chr4 | 9922487 | 9924630 | |
| Inversion | Chr8 | 14715783 | 15367864 | LOC_Os08g24380 |
| Inversion | Chr5 | 14732384 | 15205986 | LOC_Os05g25370 |
| Inversion | Chr5 | 14732392 | 15205987 | LOC_Os05g25370 |
| Inversion | Chr8 | 14753335 | 15367865 | LOC_Os08g24420 |
| Inversion | Chr7 | 28335311 | 28424432 | 2 |
| Inversion | Chr7 | 28335324 | 28435630 | LOC_Os07g47370 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 1226935 | Chr4 | 22511224 | LOC_Os09g02729 |
| Translocation | Chr7 | 4193575 | Chr1 | 27741632 | LOC_Os07g08220 |
| Translocation | Chr7 | 4195754 | Chr1 | 27741635 | |
| Translocation | Chr7 | 16993164 | Chr2 | 32205090 | 2 |
| Translocation | Chr11 | 23031366 | Chr7 | 2896031 | 2 |