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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40801271	G-A	HET
SBS	Chr10	1189919	C-G	HET
SBS	Chr11	12658506	G-A	Homo
SBS	Chr11	18197484	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g31220
SBS	Chr11	8688934	C-G	Homo
SBS	Chr11	8924354	C-T	HET
SBS	Chr12	14464461	A-T	HET
SBS	Chr12	14464466	A-T	HET
SBS	Chr12	9956921	A-T	HET
SBS	Chr2	24906512	C-T	Homo
SBS	Chr2	32975836	G-A	HET
SBS	Chr2	34282939	C-T	HET
SBS	Chr2	5504339	A-T	Homo
SBS	Chr3	12881009	T-G	HET
SBS	Chr3	20871784	G-A	Homo
SBS	Chr3	3574914	G-A	HET
SBS	Chr3	36354537	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g64320
SBS	Chr3	4481609	C-T	HET
SBS	Chr3	767187	G-A	Homo	STOP_GAINED	LOC_Os03g02260
SBS	Chr4	12795171	G-C	HET
SBS	Chr4	30795102	A-G	HET
SBS	Chr4	9299198	C-T	HET
SBS	Chr5	16963231	A-G	HET
SBS	Chr5	17578927	T-C	Homo
SBS	Chr5	25289859	C-T	HET
SBS	Chr6	15917015	C-T	HET
SBS	Chr8	15708429	T-C	Homo
SBS	Chr8	6954457	C-T	HET
SBS	Chr9	5992768	T-A	HET

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	582664	582666	2
Deletion	Chr10	656898	656900	2
Deletion	Chr9	727723	727734	11
Deletion	Chr2	3850129	3850132	3
Deletion	Chr3	6972092	6972096	4
Deletion	Chr10	7982582	7982590	8	LOC_Os10g15340
Deletion	Chr4	9248331	9248357	26
Deletion	Chr10	9933909	9933910	1
Deletion	Chr12	11205052	11205060	8
Deletion	Chr11	11953715	11953716	1
Deletion	Chr6	12836255	12836271	16
Deletion	Chr11	13552444	13552460	16
Deletion	Chr3	21268429	21268435	6	LOC_Os03g38330
Deletion	Chr1	22180356	22180358	2
Deletion	Chr5	22708444	22708448	4
Deletion	Chr8	22879568	22879570	2
Deletion	Chr3	23533787	23533793	6
Deletion	Chr1	25693598	25693608	10
Deletion	Chr8	28424498	28424502	4
Deletion	Chr1	29004162	29004166	4
Deletion	Chr6	30436001	30457000	20999	4
Deletion	Chr6	30465001	30585000	119999	18
Deletion	Chr6	30588001	30600000	11999	2
Deletion	Chr6	30608001	30633000	24999	5
Deletion	Chr1	37100438	37100439	1
Deletion	Chr1	37101238	37101244	6
Deletion	Chr1	39717709	39717710	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25245398	25245399	2
Insertion	Chr1	29770248	29770250	3
Insertion	Chr12	13318573	13318573	1
Insertion	Chr3	8952516	8952517	2
Insertion	Chr5	21816867	21816867	1
Insertion	Chr7	13147041	13147046	6

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12052805	12123713
Inversion	Chr4	12052809	12123714

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4963585	Chr1	37745614	2
Translocation	Chr4	9051463	Chr2	13477793	2
Translocation	Chr12	26145584	Chr11	17687093

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