Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37065676	T-A	HET
SBS	Chr10	18281785	C-T	HET
SBS	Chr10	18926955	G-A	HET
SBS	Chr10	3037547	A-G	HET
SBS	Chr11	11956791	C-G	HET
SBS	Chr11	13859190	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24330
SBS	Chr11	13859191	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24330
SBS	Chr11	15180057	G-A	Homo
SBS	Chr12	13949977	T-A	HET
SBS	Chr12	14293756	G-T	HET
SBS	Chr12	4926547	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g09400
SBS	Chr12	8661176	G-A	HET
SBS	Chr2	10429460	A-G	HET
SBS	Chr2	4521986	G-A	Homo
SBS	Chr2	4939644	T-A	HET
SBS	Chr4	1633650	T-A	Homo
SBS	Chr4	26862990	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g45420
SBS	Chr4	26862991	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g45420
SBS	Chr4	31356967	G-A	HET
SBS	Chr4	31454553	T-A	HET
SBS	Chr4	7387110	C-T	Homo
SBS	Chr5	21789750	G-A	Homo
SBS	Chr5	6524960	G-T	HET
SBS	Chr6	1319824	G-T	HET
SBS	Chr6	13787971	G-C	HET
SBS	Chr6	2421030	C-T	HET
SBS	Chr6	27796427	G-T	HET
SBS	Chr6	27796428	C-T	HET
SBS	Chr6	4891163	T-C	HET
SBS	Chr6	8814958	T-A	HET
SBS	Chr7	11415717	C-T	HET

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1548457	1548461	4	LOC_Os11g03880
Deletion	Chr4	2633535	2633536	1
Deletion	Chr11	4238446	4238447	1	LOC_Os11g08090
Deletion	Chr4	5110850	5110851	1
Deletion	Chr5	7264824	7264844	20
Deletion	Chr4	8082760	8082769	9
Deletion	Chr7	9596891	9596892	1
Deletion	Chr1	11108916	11108941	25
Deletion	Chr6	12659108	12659110	2
Deletion	Chr10	16579419	16579420	1
Deletion	Chr6	19850157	19850163	6
Deletion	Chr3	22305754	22305757	3
Deletion	Chr12	22748760	22748795	35
Deletion	Chr7	24027001	24098000	70999	12
Deletion	Chr8	25234001	25315000	80999	11
Deletion	Chr7	27069536	27069568	32
Deletion	Chr7	27881613	27881628	15	LOC_Os07g46650
Deletion	Chr1	30666915	30666931	16	LOC_Os01g53370
Deletion	Chr1	31764431	31764438	7
Deletion	Chr1	34725000	34725001	1
Deletion	Chr1	38390471	38390472	1	LOC_Os01g66110

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	33244708	33244708	1
Insertion	Chr3	34742196	34742200	5

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3706338	4637733	2
Inversion	Chr8	25313616	25722648	LOC_Os08g39950
Inversion	Chr8	25394051	25722640

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	8782644	Chr4	9701886	2
Translocation	Chr12	9100003	Chr1	34185283	2
Translocation	Chr12	9101069	Chr1	34185265	2
Translocation	Chr12	9694988	Chr3	21846276
Translocation	Chr7	9765197	Chr5	4241318	LOC_Os07g16630
Translocation	Chr11	14230015	Chr7	15472217	2
Translocation	Chr8	17788317	Chr6	27751238	2
Translocation	Chr7	24027926	Chr6	27751240	2
Translocation	Chr7	24096043	Chr6	27751827	2
Translocation	Chr4	24261709	Chr1	15818172	LOC_Os04g40874
Translocation	Chr4	24261818	Chr1	42642679	2
Translocation	Chr3	24678380	Chr2	9608623

Main menu