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| Mutant Information |
|---|
| Mutant Name | FN2331 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2331 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16503284 | G-A | HET | ||
| SBS | Chr1 | 29214103 | G-A | HET | ||
| SBS | Chr1 | 32131319 | C-T | HET | ||
| SBS | Chr1 | 33245398 | C-T | HET | ||
| SBS | Chr1 | 42579424 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g73480 |
| SBS | Chr10 | 5140212 | C-A | Homo | ||
| SBS | Chr10 | 9473207 | G-T | HET | ||
| SBS | Chr10 | 9473208 | A-G | HET | ||
| SBS | Chr11 | 10680008 | A-G | Homo | ||
| SBS | Chr11 | 27323446 | C-T | HET | ||
| SBS | Chr11 | 8756094 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g15440 |
| SBS | Chr12 | 12912783 | A-C | Homo | ||
| SBS | Chr12 | 14281313 | G-A | HET | ||
| SBS | Chr12 | 16724688 | G-A | Homo | ||
| SBS | Chr12 | 4309237 | G-A | HET | ||
| SBS | Chr12 | 5373303 | C-T | HET | ||
| SBS | Chr12 | 9937094 | A-T | HET | ||
| SBS | Chr2 | 31913091 | G-A | Homo | ||
| SBS | Chr2 | 3725630 | A-G | HET | ||
| SBS | Chr2 | 7225691 | G-A | HET | ||
| SBS | Chr3 | 1695137 | C-G | HET | ||
| SBS | Chr3 | 25415069 | C-T | Homo | ||
| SBS | Chr3 | 30540568 | G-T | HET | ||
| SBS | Chr3 | 31114956 | C-T | HET | ||
| SBS | Chr4 | 21020543 | G-A | HET | ||
| SBS | Chr4 | 34878 | G-A | HET | ||
| SBS | Chr4 | 35405916 | G-A | Homo | ||
| SBS | Chr4 | 6282189 | C-T | Homo | ||
| SBS | Chr4 | 9738778 | C-G | Homo | ||
| SBS | Chr5 | 11973984 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g20410 |
| SBS | Chr5 | 17741715 | T-A | HET | ||
| SBS | Chr6 | 13207281 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g22710 |
| SBS | Chr6 | 14489959 | G-A | HET | ||
| SBS | Chr6 | 2781837 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g06050 |
| SBS | Chr6 | 5361613 | T-A | HET | ||
| SBS | Chr7 | 3614196 | C-T | Homo | ||
| SBS | Chr8 | 14214913 | T-G | Homo | ||
| SBS | Chr8 | 22951601 | C-T | HET | ||
| SBS | Chr9 | 18072273 | C-T | HET | ||
| SBS | Chr9 | 8146194 | T-G | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 6338021 | 6338022 | 1 | |
| Deletion | Chr12 | 7380288 | 7380298 | 10 | |
| Deletion | Chr3 | 11663990 | 11664004 | 14 | LOC_Os03g20580 |
| Deletion | Chr1 | 11670570 | 11670574 | 4 | |
| Deletion | Chr9 | 11971063 | 11971064 | 1 | |
| Deletion | Chr8 | 13878722 | 13878724 | 2 | |
| Deletion | Chr7 | 22200870 | 22200898 | 28 | LOC_Os07g37050 |
| Deletion | Chr5 | 26666750 | 26666754 | 4 | |
| Deletion | Chr6 | 26781856 | 26781860 | 4 | |
| Deletion | Chr2 | 29981560 | 29981568 | 8 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 15928152 | 16039353 | |
| Inversion | Chr8 | 15928155 | 16039353 | |
| Inversion | Chr3 | 29518543 | 30030213 | LOC_Os03g51580 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 10070851 | Chr5 | 5212167 | 2 |
| Translocation | Chr9 | 13766770 | Chr7 | 26506286 | 2 |
| Translocation | Chr4 | 15932851 | Chr3 | 13456995 | 2 |
| Translocation | Chr8 | 16384982 | Chr7 | 15520166 | |
| Translocation | Chr2 | 16736332 | Chr1 | 1389900 | 2 |
| Translocation | Chr5 | 27467343 | Chr3 | 35721663 | |
| Translocation | Chr6 | 30997275 | Chr3 | 13643380 |