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| Mutant Information |
|---|
| Mutant Name | FN2332 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2332 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13712794 | C-T | HET | ||
| SBS | Chr1 | 16573752 | C-T | HET | ||
| SBS | Chr10 | 16917029 | C-T | HET | ||
| SBS | Chr11 | 13463650 | C-A | HET | ||
| SBS | Chr11 | 17162596 | T-G | HET | ||
| SBS | Chr11 | 25460024 | G-A | HET | ||
| SBS | Chr11 | 814666 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g02580 |
| SBS | Chr12 | 20097077 | C-T | HET | ||
| SBS | Chr12 | 21426316 | C-T | HET | ||
| SBS | Chr12 | 8939618 | G-A | HET | ||
| SBS | Chr12 | 9320822 | A-G | HET | ||
| SBS | Chr2 | 10407006 | A-G | HET | ||
| SBS | Chr2 | 33912844 | C-T | HET | ||
| SBS | Chr3 | 16900719 | A-C | HET | ||
| SBS | Chr3 | 17224578 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g30180 |
| SBS | Chr3 | 23775983 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g42690 |
| SBS | Chr3 | 33707908 | A-T | Homo | ||
| SBS | Chr4 | 11582135 | C-T | HET | ||
| SBS | Chr4 | 16869946 | G-A | HET | ||
| SBS | Chr4 | 2388005 | G-T | HET | ||
| SBS | Chr4 | 6745174 | G-A | HET | ||
| SBS | Chr5 | 11769080 | A-G | Homo | ||
| SBS | Chr5 | 15370221 | C-T | Homo | ||
| SBS | Chr5 | 19733781 | C-T | HET | ||
| SBS | Chr5 | 5350567 | C-T | HET | ||
| SBS | Chr6 | 30431013 | C-T | HET | ||
| SBS | Chr7 | 14215147 | G-A | HET | ||
| SBS | Chr8 | 13541546 | C-T | HET | ||
| SBS | Chr8 | 17728158 | C-A | HET | ||
| SBS | Chr9 | 9710065 | G-T | HET | ||
| SBS | Chr9 | 9710066 | A-C | HET |
Deletions: 28
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 165788 | 165789 | 1 | |
| Deletion | Chr11 | 1046536 | 1046542 | 6 | |
| Deletion | Chr7 | 2069470 | 2069481 | 11 | |
| Deletion | Chr6 | 4111062 | 4111063 | 1 | |
| Deletion | Chr1 | 5026147 | 5026149 | 2 | |
| Deletion | Chr12 | 5048402 | 5048421 | 19 | |
| Deletion | Chr9 | 5897458 | 5897459 | 1 | |
| Deletion | Chr3 | 6466220 | 6466222 | 2 | |
| Deletion | Chr10 | 7658926 | 7658927 | 1 | |
| Deletion | Chr8 | 11757490 | 11757503 | 13 | |
| Deletion | Chr8 | 13909011 | 13909012 | 1 | LOC_Os08g23090 |
| Deletion | Chr8 | 14429482 | 14429484 | 2 | |
| Deletion | Chr9 | 15201435 | 15201438 | 3 | |
| Deletion | Chr10 | 15549902 | 15549909 | 7 | |
| Deletion | Chr3 | 16220725 | 16220737 | 12 | |
| Deletion | Chr1 | 16362117 | 16362133 | 16 | |
| Deletion | Chr2 | 17197674 | 17197690 | 16 | |
| Deletion | Chr8 | 17696001 | 17730000 | 33999 | 3 |
| Deletion | Chr2 | 17873503 | 17873504 | 1 | |
| Deletion | Chr1 | 19204890 | 19204899 | 9 | |
| Deletion | Chr12 | 20237001 | 20255000 | 17999 | 2 |
| Deletion | Chr12 | 20331001 | 20428000 | 96999 | 18 |
| Deletion | Chr8 | 20652924 | 20652933 | 9 | |
| Deletion | Chr7 | 21424883 | 21424906 | 23 | |
| Deletion | Chr7 | 27207491 | 27207502 | 11 | |
| Deletion | Chr3 | 32115330 | 32115339 | 9 | |
| Deletion | Chr2 | 33175712 | 33175727 | 15 | |
| Deletion | Chr2 | 34237208 | 34237211 | 3 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 3947893 | 3947894 | 2 | |
| Insertion | Chr12 | 11626172 | 11626178 | 7 | |
| Insertion | Chr5 | 25851803 | 25851804 | 2 | |
| Insertion | Chr6 | 4569321 | 4569332 | 12 |
No Inversion
No Translocation