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| Mutant Information |
|---|
| Mutant Name | FN2334 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2334 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11662817 | C-G | Homo | ||
| SBS | Chr1 | 14339031 | C-T | HET | ||
| SBS | Chr1 | 35765566 | G-C | Homo | ||
| SBS | Chr10 | 6921840 | A-C | HET | ||
| SBS | Chr11 | 10069663 | T-C | HET | ||
| SBS | Chr11 | 1962928 | C-A | HET | ||
| SBS | Chr11 | 23697777 | A-C | HET | ||
| SBS | Chr11 | 5782664 | T-C | HET | ||
| SBS | Chr11 | 9613046 | G-A | HET | ||
| SBS | Chr12 | 4011765 | C-T | HET | ||
| SBS | Chr2 | 1271105 | C-A | HET | ||
| SBS | Chr2 | 1463639 | G-C | HET | ||
| SBS | Chr2 | 1557705 | G-T | HET | ||
| SBS | Chr2 | 215408 | T-A | HET | ||
| SBS | Chr2 | 31961111 | G-A | Homo | ||
| SBS | Chr2 | 33782972 | T-A | Homo | ||
| SBS | Chr3 | 14023957 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g24620 |
| SBS | Chr3 | 36036388 | G-A | HET | ||
| SBS | Chr3 | 6504942 | T-A | HET | ||
| SBS | Chr4 | 1798478 | C-T | HET | ||
| SBS | Chr4 | 30244248 | A-G | HET | ||
| SBS | Chr4 | 31915022 | A-G | HET | ||
| SBS | Chr5 | 27241554 | C-T | Homo | ||
| SBS | Chr6 | 1369569 | T-C | HET | ||
| SBS | Chr6 | 16872151 | G-A | HET | ||
| SBS | Chr6 | 20067146 | G-A | HET | ||
| SBS | Chr6 | 2681049 | G-A | HET | ||
| SBS | Chr6 | 3085505 | C-A | HET | ||
| SBS | Chr7 | 12335337 | C-T | HET | ||
| SBS | Chr7 | 2228075 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g05050 |
| SBS | Chr8 | 15512871 | C-T | HET | ||
| SBS | Chr8 | 15741253 | C-A | HET | ||
| SBS | Chr8 | 16056037 | G-A | HET | ||
| SBS | Chr8 | 16133042 | G-A | HET | ||
| SBS | Chr8 | 16259999 | A-T | HET | ||
| SBS | Chr8 | 2659571 | G-C | Homo | ||
| SBS | Chr9 | 11294416 | C-T | Homo | ||
| SBS | Chr9 | 2902990 | T-G | HET | ||
| SBS | Chr9 | 3780129 | C-T | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 2507302 | 2507304 | 2 | LOC_Os01g05320 |
| Deletion | Chr10 | 9667712 | 9667713 | 1 | LOC_Os10g18990 |
| Deletion | Chr5 | 11488001 | 11493000 | 4999 | LOC_Os05g19700 |
| Deletion | Chr3 | 23598509 | 23598513 | 4 | |
| Deletion | Chr5 | 24956568 | 24956570 | 2 | |
| Deletion | Chr2 | 26838355 | 26838357 | 2 | |
| Deletion | Chr7 | 28463304 | 28463305 | 1 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 13395688 | 13395691 | 4 | |
| Insertion | Chr10 | 14002198 | 14002198 | 1 | |
| Insertion | Chr4 | 481220 | 481222 | 3 | |
| Insertion | Chr5 | 12568234 | 12568234 | 1 | |
| Insertion | Chr5 | 5266970 | 5266971 | 2 | |
| Insertion | Chr6 | 12551051 | 12551051 | 1 | |
| Insertion | Chr8 | 12656502 | 12656502 | 1 | |
| Insertion | Chr8 | 26643987 | 26643987 | 1 | LOC_Os08g42160 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 18725616 | 18896274 | |
| Inversion | Chr1 | 18725621 | 18896279 | |
| Inversion | Chr2 | 31254092 | 31587537 | LOC_Os02g51100 |
| Inversion | Chr2 | 31254109 | 31587638 | LOC_Os02g51100 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4788930 | Chr3 | 16568136 | |
| Translocation | Chr12 | 7417519 | Chr8 | 16333966 | |
| Translocation | Chr11 | 12932010 | Chr2 | 14658114 | |
| Translocation | Chr4 | 14116236 | Chr2 | 19325009 | 2 |
| Translocation | Chr4 | 14216442 | Chr3 | 17116642 | |
| Translocation | Chr2 | 14658133 | Chr1 | 17010103 | |
| Translocation | Chr5 | 20414749 | Chr1 | 43066778 | 2 |
| Translocation | Chr11 | 25898149 | Chr5 | 14650659 |