Search Results
Mutant Information |
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Mutant Name | FN2337 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2337 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 39
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 5431653 | A-T | HET | ||
SBS | Chr1 | 13228897 | G-A | HET | ||
SBS | Chr1 | 23765272 | C-T | HET | ||
SBS | Chr1 | 27779687 | T-G | HET | ||
SBS | Chr1 | 38367660 | A-T | HET | ||
SBS | Chr2 | 6424292 | T-C | HET | ||
SBS | Chr2 | 6614874 | C-T | HET | ||
SBS | Chr2 | 12414409 | T-C | HET | ||
SBS | Chr2 | 21721624 | A-C | HET | ||
SBS | Chr2 | 33104378 | A-T | HET | ||
SBS | Chr3 | 11365767 | A-G | HET | ||
SBS | Chr3 | 12193656 | G-A | HET | ||
SBS | Chr3 | 18794581 | G-A | Homo | ||
SBS | Chr3 | 34153647 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g60050 |
SBS | Chr3 | 35589667 | C-A | HET | ||
SBS | Chr4 | 3269700 | G-C | HET | ||
SBS | Chr4 | 9638072 | G-A | HET | ||
SBS | Chr4 | 11354395 | G-T | HET | ||
SBS | Chr5 | 7555568 | T-C | Homo | ||
SBS | Chr5 | 11873285 | A-G | HET | ||
SBS | Chr5 | 26088344 | C-T | HET | ||
SBS | Chr6 | 3987701 | G-A | HET | ||
SBS | Chr6 | 13267041 | C-A | HET | ||
SBS | Chr7 | 5530132 | T-C | HET | ||
SBS | Chr7 | 7637842 | G-T | HET | ||
SBS | Chr7 | 16167087 | G-A | Homo | ||
SBS | Chr8 | 2903816 | C-T | HET | ||
SBS | Chr8 | 16833842 | G-A | HET | ||
SBS | Chr8 | 21380454 | A-C | HET | ||
SBS | Chr8 | 25380563 | C-A | HET | ||
SBS | Chr9 | 22309705 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g38834 |
SBS | Chr10 | 6395583 | G-A | HET | ||
SBS | Chr11 | 778173 | C-T | HET | ||
SBS | Chr11 | 1644067 | A-T | HET | STOP_GAINED | LOC_Os11g04060 |
SBS | Chr11 | 2126627 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g04960 |
SBS | Chr11 | 9735965 | G-A | HET | ||
SBS | Chr11 | 18164370 | G-A | HET | ||
SBS | Chr11 | 20324063 | A-T | HET | ||
SBS | Chr12 | 20691487 | C-T | HET |
Deletions: 9
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 1511059 | 1511065 | 6 | |
Deletion | Chr4 | 3929642 | 3929672 | 30 | |
Deletion | Chr7 | 15031470 | 15031472 | 2 | |
Deletion | Chr11 | 17788001 | 17926000 | 137999 | 16 |
Deletion | Chr11 | 17930001 | 17986000 | 55999 | 10 |
Deletion | Chr11 | 17989001 | 18167000 | 177999 | 25 |
Deletion | Chr7 | 24930686 | 24930687 | 1 | |
Deletion | Chr2 | 28384425 | 28384446 | 21 | |
Deletion | Chr3 | 33062250 | 33062263 | 13 | LOC_Os03g58070 |
Insertions: 5
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 11146369 | 11356099 | LOC_Os04g19990 |
Inversion | Chr4 | 11146376 | 11356108 | LOC_Os04g19990 |
Inversion | Chr2 | 29129335 | 29190547 | 2 |
Inversion | Chr2 | 29129360 | 29190550 | 2 |
Translocations: 16
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 2694518 | Chr6 | 22683226 | |
Translocation | Chr8 | 6751269 | Chr2 | 610967 | 2 |
Translocation | Chr8 | 7487639 | Chr2 | 32536383 | 2 |
Translocation | Chr11 | 12942259 | Chr4 | 779239 | 2 |
Translocation | Chr9 | 13077399 | Chr1 | 3091380 | 2 |
Translocation | Chr9 | 13377111 | Chr1 | 15921904 | LOC_Os09g22090 |
Translocation | Chr11 | 18163993 | Chr8 | 4442062 | 2 |
Translocation | Chr11 | 20512011 | Chr2 | 32513896 | 2 |
Translocation | Chr11 | 20512684 | Chr8 | 7487628 | |
Translocation | Chr11 | 21580983 | Chr9 | 8955209 | |
Translocation | Chr11 | 24566534 | Chr10 | 2436173 | LOC_Os11g41034 |
Translocation | Chr11 | 26252057 | Chr7 | 13389361 | 2 |
Translocation | Chr12 | 27167560 | Chr6 | 16774717 | 2 |
Translocation | Chr11 | 27797915 | Chr5 | 23589801 | 2 |
Translocation | Chr11 | 28430651 | Chr8 | 2834652 | 2 |
Translocation | Chr4 | 29934424 | Chr3 | 21827776 | 2 |