Search Results
| Mutant Information |
|---|
| Mutant Name | FN2338 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2338 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37332374 | G-C | HET | ||
| SBS | Chr3 | 30964394 | C-T | HET | ||
| SBS | Chr4 | 1099119 | A-G | HET | ||
| SBS | Chr4 | 2065588 | T-C | HET | ||
| SBS | Chr4 | 2439889 | T-C | HET | ||
| SBS | Chr4 | 2740847 | G-T | HET | ||
| SBS | Chr4 | 5498678 | G-A | HET | ||
| SBS | Chr4 | 17642224 | C-T | HET | ||
| SBS | Chr4 | 31741825 | C-T | Homo | ||
| SBS | Chr5 | 10009212 | A-T | HET | ||
| SBS | Chr5 | 20067422 | C-T | Homo | ||
| SBS | Chr5 | 28489708 | T-G | Homo | ||
| SBS | Chr6 | 8007620 | A-T | HET | ||
| SBS | Chr6 | 12289677 | A-G | Homo | ||
| SBS | Chr6 | 20036183 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g34440 |
| SBS | Chr6 | 29182658 | A-G | HET | ||
| SBS | Chr7 | 14516503 | G-A | HET | ||
| SBS | Chr7 | 19881944 | G-C | Homo | ||
| SBS | Chr8 | 4504664 | G-A | Homo | ||
| SBS | Chr8 | 5978753 | T-C | HET | ||
| SBS | Chr8 | 8051819 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g13540 |
| SBS | Chr8 | 20868398 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g33450 |
| SBS | Chr9 | 15531119 | G-T | HET | ||
| SBS | Chr9 | 15719708 | A-T | HET | ||
| SBS | Chr9 | 17607390 | C-T | HET | ||
| SBS | Chr9 | 20490842 | T-A | HET | ||
| SBS | Chr10 | 7388841 | G-T | HET | ||
| SBS | Chr11 | 1803213 | A-G | Homo | ||
| SBS | Chr11 | 10055323 | C-T | HET | ||
| SBS | Chr11 | 11707196 | G-T | HET | ||
| SBS | Chr11 | 12670327 | A-G | HET | ||
| SBS | Chr11 | 14282809 | G-T | HET | ||
| SBS | Chr12 | 14010044 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24530 |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 2654945 | 2654960 | 15 | |
| Deletion | Chr2 | 8053276 | 8053277 | 1 | LOC_Os02g14590 |
| Deletion | Chr8 | 8545561 | 8545562 | 1 | |
| Deletion | Chr1 | 9032805 | 9032806 | 1 | |
| Deletion | Chr7 | 10506161 | 10506162 | 1 | LOC_Os07g17780 |
| Deletion | Chr2 | 11037315 | 11037316 | 1 | |
| Deletion | Chr10 | 11049936 | 11049939 | 3 | |
| Deletion | Chr8 | 12088108 | 12088113 | 5 | LOC_Os08g20170 |
| Deletion | Chr2 | 13889830 | 13889835 | 5 | |
| Deletion | Chr11 | 17694226 | 17694227 | 1 | |
| Deletion | Chr12 | 18849292 | 18849297 | 5 | |
| Deletion | Chr6 | 21056877 | 21056901 | 24 | LOC_Os06g36020 |
| Deletion | Chr6 | 22462305 | 22462310 | 5 | LOC_Os06g37970 |
| Deletion | Chr11 | 26395729 | 26395730 | 1 | |
| Deletion | Chr2 | 28945902 | 28945907 | 5 | LOC_Os02g47410 |
| Deletion | Chr6 | 29207682 | 29207686 | 4 | |
| Deletion | Chr4 | 31145762 | 31145771 | 9 | |
| Deletion | Chr4 | 34326032 | 34326042 | 10 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 33911351 | 33911351 | 1 | |
| Insertion | Chr8 | 28366463 | 28366463 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 24601984 | 25024057 | |
| Inversion | Chr1 | 29699143 | 29721877 | 2 |
| Inversion | Chr1 | 29699150 | 29721887 | 2 |
| Inversion | Chr1 | 37967624 | 38185703 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 7871791 | Chr2 | 34491828 | |
| Translocation | Chr9 | 15072038 | Chr4 | 11228786 | |
| Translocation | Chr10 | 15106989 | Chr9 | 20961962 | LOC_Os10g28975 |
| Translocation | Chr10 | 15108342 | Chr9 | 20961968 | |
| Translocation | Chr7 | 25059120 | Chr2 | 19086734 |