Search Results
Mutant Information |
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Mutant Name | FN2339 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2339 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 30
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 4789387 | G-A | Homo | ||
SBS | Chr1 | 31565046 | C-T | HET | ||
SBS | Chr1 | 36601723 | T-A | HET | ||
SBS | Chr1 | 38494555 | C-T | HET | ||
SBS | Chr2 | 14066139 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g24250 |
SBS | Chr2 | 19618883 | A-G | Homo | ||
SBS | Chr2 | 25998351 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g43150 |
SBS | Chr2 | 30575573 | G-A | HET | ||
SBS | Chr3 | 14758331 | C-T | HET | ||
SBS | Chr3 | 26316262 | G-A | HET | ||
SBS | Chr3 | 26625223 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g47070 |
SBS | Chr5 | 19030586 | C-T | HET | ||
SBS | Chr5 | 19239047 | G-A | HET | ||
SBS | Chr5 | 25097864 | C-T | Homo | ||
SBS | Chr6 | 25778143 | G-A | Homo | ||
SBS | Chr6 | 29801763 | A-G | Homo | ||
SBS | Chr7 | 8222825 | C-T | HET | ||
SBS | Chr8 | 8187538 | G-A | HET | ||
SBS | Chr8 | 12148055 | C-T | Homo | ||
SBS | Chr8 | 17615453 | G-A | HET | ||
SBS | Chr8 | 22902542 | G-A | HET | ||
SBS | Chr8 | 24303934 | T-C | HET | ||
SBS | Chr10 | 1460100 | G-A | HET | ||
SBS | Chr10 | 15850750 | A-G | HET | ||
SBS | Chr11 | 8384767 | A-G | HET | ||
SBS | Chr11 | 14365036 | T-G | HET | ||
SBS | Chr11 | 17263177 | C-A | HET | ||
SBS | Chr12 | 10555486 | T-A | HET | ||
SBS | Chr12 | 22233313 | T-C | HET | ||
SBS | Chr12 | 24736456 | A-G | Homo |
Deletions: 13
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 28763937 | 28763939 | 3 | LOC_Os06g47510 |
Insertion | Chr12 | 26329162 | 26329162 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 24261279 | 24263645 | |
Inversion | Chr3 | 24261288 | 24263649 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 2239005 | Chr1 | 2819544 | |
Translocation | Chr9 | 13454063 | Chr3 | 25402470 | 2 |
Translocation | Chr11 | 26666512 | Chr6 | 10857849 |