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Mutant Information

Mutant NameFN2342 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2342 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 36
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr118038355C-AHomo
SBSChr126247246G-AHET
SBSChr142167837C-THET
SBSChr14977770A-THomo
SBSChr14977771A-THomo
SBSChr1015468601C-GHomo
SBSChr1120690002T-AHET
SBSChr115888731G-THET
SBSChr1216776114A-CHETNON_SYNONYMOUS_CODINGLOC_Os12g28360
SBSChr1217806518G-THET
SBSChr128421537C-THomo
SBSChr129564778G-AHET
SBSChr21247431G-THomo
SBSChr21247432G-THomo
SBSChr226304188T-GHET
SBSChr228796925T-AHETNON_SYNONYMOUS_CODINGLOC_Os02g47170
SBSChr232228134T-AHET
SBSChr235124346C-AHETNON_SYNONYMOUS_CODINGLOC_Os02g57340
SBSChr2556340G-AHET
SBSChr321096203C-THET
SBSChr323227061T-CHET
SBSChr333289146C-GHomo
SBSChr333699271T-AHomo
SBSChr414851167C-AHomo
SBSChr423624265G-THomo
SBSChr48390522G-AHET
SBSChr526485266G-AHomo
SBSChr58664270C-THomo
SBSChr714755625G-CHET
SBSChr719044128T-CHomo
SBSChr719156138C-THomo
SBSChr72599525C-AHomoNON_SYNONYMOUS_CODINGLOC_Os07g05560
SBSChr812806058G-AHETNON_SYNONYMOUS_CODINGLOC_Os08g21480
SBSChr86762161C-THET
SBSChr918819569C-THET
SBSChr920396523C-THET

Deletions: 13
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr4234608023460855
DeletionChr1337204233720453
DeletionChr74518124451814016
DeletionChr8519217551921772
DeletionChr105354176535419115
DeletionChr7103825481038257628LOC_Os07g17580
DeletionChr5182612071826122316
DeletionChr2204064612040648423
DeletionChr8211562132115623724LOC_Os08g33800
DeletionChr626824001269030007899911
DeletionChr527840437278404414LOC_Os05g48580
DeletionChr3333139713331399120LOC_Os03g58480
DeletionChr333616001336980008199914

Insertions: 4
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr12699474569947451
InsertionChr4796146279614621
InsertionChr613729281137292811
InsertionChr914311000143110001

No Inversion

Translocations: 3
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr58774613Chr4161018612
TranslocationChr1220909713Chr68521025
TranslocationChr426909982Chr1432480912