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Mutant Information |
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Mutant Name | FN2342 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2342 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 36
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 18038355 | C-A | Homo | ||
SBS | Chr1 | 26247246 | G-A | HET | ||
SBS | Chr1 | 42167837 | C-T | HET | ||
SBS | Chr1 | 4977770 | A-T | Homo | ||
SBS | Chr1 | 4977771 | A-T | Homo | ||
SBS | Chr10 | 15468601 | C-G | Homo | ||
SBS | Chr11 | 20690002 | T-A | HET | ||
SBS | Chr11 | 5888731 | G-T | HET | ||
SBS | Chr12 | 16776114 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g28360 |
SBS | Chr12 | 17806518 | G-T | HET | ||
SBS | Chr12 | 8421537 | C-T | Homo | ||
SBS | Chr12 | 9564778 | G-A | HET | ||
SBS | Chr2 | 1247431 | G-T | Homo | ||
SBS | Chr2 | 1247432 | G-T | Homo | ||
SBS | Chr2 | 26304188 | T-G | HET | ||
SBS | Chr2 | 28796925 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g47170 |
SBS | Chr2 | 32228134 | T-A | HET | ||
SBS | Chr2 | 35124346 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g57340 |
SBS | Chr2 | 556340 | G-A | HET | ||
SBS | Chr3 | 21096203 | C-T | HET | ||
SBS | Chr3 | 23227061 | T-C | HET | ||
SBS | Chr3 | 33289146 | C-G | Homo | ||
SBS | Chr3 | 33699271 | T-A | Homo | ||
SBS | Chr4 | 14851167 | C-A | Homo | ||
SBS | Chr4 | 23624265 | G-T | Homo | ||
SBS | Chr4 | 8390522 | G-A | HET | ||
SBS | Chr5 | 26485266 | G-A | Homo | ||
SBS | Chr5 | 8664270 | C-T | Homo | ||
SBS | Chr7 | 14755625 | G-C | HET | ||
SBS | Chr7 | 19044128 | T-C | Homo | ||
SBS | Chr7 | 19156138 | C-T | Homo | ||
SBS | Chr7 | 2599525 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g05560 |
SBS | Chr8 | 12806058 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g21480 |
SBS | Chr8 | 6762161 | C-T | HET | ||
SBS | Chr9 | 18819569 | C-T | HET | ||
SBS | Chr9 | 20396523 | C-T | HET |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 2346080 | 2346085 | 5 | |
Deletion | Chr1 | 3372042 | 3372045 | 3 | |
Deletion | Chr7 | 4518124 | 4518140 | 16 | |
Deletion | Chr8 | 5192175 | 5192177 | 2 | |
Deletion | Chr10 | 5354176 | 5354191 | 15 | |
Deletion | Chr7 | 10382548 | 10382576 | 28 | LOC_Os07g17580 |
Deletion | Chr5 | 18261207 | 18261223 | 16 | |
Deletion | Chr2 | 20406461 | 20406484 | 23 | |
Deletion | Chr8 | 21156213 | 21156237 | 24 | LOC_Os08g33800 |
Deletion | Chr6 | 26824001 | 26903000 | 78999 | 11 |
Deletion | Chr5 | 27840437 | 27840441 | 4 | LOC_Os05g48580 |
Deletion | Chr3 | 33313971 | 33313991 | 20 | LOC_Os03g58480 |
Deletion | Chr3 | 33616001 | 33698000 | 81999 | 14 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 6994745 | 6994745 | 1 | |
Insertion | Chr4 | 7961462 | 7961462 | 1 | |
Insertion | Chr6 | 13729281 | 13729281 | 1 | |
Insertion | Chr9 | 14311000 | 14311000 | 1 |
No Inversion
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr5 | 8774613 | Chr4 | 16101861 | 2 |
Translocation | Chr12 | 20909713 | Chr6 | 8521025 | |
Translocation | Chr4 | 26909982 | Chr1 | 43248091 | 2 |