Search Results
| Mutant Information |
|---|
| Mutant Name | FN2347 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2347 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9003330 | C-T | HET | ||
| SBS | Chr1 | 9529085 | A-T | Homo | ||
| SBS | Chr1 | 11692231 | A-T | Homo | ||
| SBS | Chr1 | 11952270 | C-T | Homo | ||
| SBS | Chr1 | 12887431 | A-C | Homo | ||
| SBS | Chr1 | 32523881 | G-A | HET | ||
| SBS | Chr1 | 37959550 | T-C | HET | ||
| SBS | Chr1 | 39401979 | A-T | Homo | ||
| SBS | Chr1 | 40371060 | T-G | HET | ||
| SBS | Chr2 | 13113413 | G-A | Homo | STOP_GAINED | LOC_Os02g22050 |
| SBS | Chr2 | 16536769 | A-T | HET | ||
| SBS | Chr3 | 949961 | G-A | HET | ||
| SBS | Chr3 | 13452142 | G-A | HET | ||
| SBS | Chr3 | 24487776 | G-A | HET | ||
| SBS | Chr3 | 27193381 | C-A | Homo | ||
| SBS | Chr3 | 29145689 | G-C | Homo | ||
| SBS | Chr4 | 2180317 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g04560 |
| SBS | Chr5 | 4051449 | G-C | HET | ||
| SBS | Chr5 | 25281276 | T-C | Homo | ||
| SBS | Chr6 | 704172 | C-T | HET | ||
| SBS | Chr7 | 354321 | G-A | Homo | ||
| SBS | Chr7 | 15165044 | C-T | HET | ||
| SBS | Chr8 | 7445606 | G-A | Homo | ||
| SBS | Chr9 | 14028624 | T-C | HET | ||
| SBS | Chr10 | 12498635 | C-T | HET | ||
| SBS | Chr10 | 20740623 | G-T | HET | ||
| SBS | Chr10 | 22210022 | T-A | HET | ||
| SBS | Chr11 | 2223912 | G-A | Homo | ||
| SBS | Chr11 | 2223913 | A-T | Homo | ||
| SBS | Chr11 | 2626387 | G-T | Homo | ||
| SBS | Chr11 | 10286058 | G-A | Homo | ||
| SBS | Chr11 | 12846442 | A-G | Homo | ||
| SBS | Chr12 | 2183457 | C-T | Homo | ||
| SBS | Chr12 | 2916283 | C-T | HET | ||
| SBS | Chr12 | 7382449 | T-A | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 865697 | 865702 | 5 | |
| Deletion | Chr8 | 2231328 | 2231330 | 2 | |
| Deletion | Chr12 | 2800340 | 2800379 | 39 | |
| Deletion | Chr8 | 4923443 | 4923448 | 5 | |
| Deletion | Chr6 | 5168522 | 5168529 | 7 | |
| Deletion | Chr1 | 8879470 | 8879472 | 2 | |
| Deletion | Chr5 | 10686298 | 10686299 | 1 | |
| Deletion | Chr10 | 13315013 | 13315014 | 1 | |
| Deletion | Chr3 | 13482512 | 13482531 | 19 | |
| Deletion | Chr8 | 14127484 | 14127522 | 38 | |
| Deletion | Chr3 | 15667023 | 15667028 | 5 | |
| Deletion | Chr5 | 16031541 | 16031547 | 6 | LOC_Os05g27560 |
| Deletion | Chr1 | 20776576 | 20776577 | 1 | |
| Deletion | Chr11 | 21147232 | 21147236 | 4 | |
| Deletion | Chr6 | 31090451 | 31090452 | 1 | |
| Deletion | Chr1 | 35547300 | 35547301 | 1 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 33581081 | 33581081 | 1 | |
| Insertion | Chr5 | 5207897 | 5207898 | 2 | |
| Insertion | Chr11 | 8700005 | 8700006 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 20563075 | 20719734 | 2 |
| Inversion | Chr2 | 20563085 | 20719737 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 662539 | Chr1 | 12620001 | LOC_Os07g02090 |
| Translocation | Chr7 | 662552 | Chr1 | 12619992 | LOC_Os07g02090 |
| Translocation | Chr9 | 4916925 | Chr2 | 11824561 | |
| Translocation | Chr7 | 8567558 | Chr1 | 42932580 |