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| Mutant Information |
|---|
| Mutant Name | FN2348 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2348 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1826614 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g04150 |
| SBS | Chr1 | 29079086 | C-T | Homo | ||
| SBS | Chr10 | 19348823 | C-T | HET | ||
| SBS | Chr10 | 20447183 | G-A | HET | ||
| SBS | Chr10 | 2125742 | T-C | HET | ||
| SBS | Chr10 | 8404215 | T-C | HET | ||
| SBS | Chr11 | 23360109 | T-A | Homo | ||
| SBS | Chr12 | 10153838 | A-C | Homo | ||
| SBS | Chr2 | 19293951 | G-A | HET | ||
| SBS | Chr2 | 33738604 | T-C | HET | ||
| SBS | Chr2 | 5384990 | G-A | HET | ||
| SBS | Chr3 | 15359454 | G-C | Homo | ||
| SBS | Chr3 | 24437206 | A-G | Homo | ||
| SBS | Chr3 | 25881248 | G-A | Homo | ||
| SBS | Chr3 | 30753851 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g53630 |
| SBS | Chr3 | 31641049 | A-C | HET | ||
| SBS | Chr5 | 29922296 | G-A | HET | ||
| SBS | Chr5 | 7611148 | G-A | HET | ||
| SBS | Chr6 | 172775 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g01260 |
| SBS | Chr6 | 26402368 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g43840 |
| SBS | Chr6 | 8472569 | T-C | HET | ||
| SBS | Chr7 | 10741989 | C-T | Homo | ||
| SBS | Chr7 | 7786508 | G-T | Homo | ||
| SBS | Chr8 | 11863016 | C-A | HET | ||
| SBS | Chr8 | 26473068 | T-C | Homo | ||
| SBS | Chr9 | 10307961 | G-T | HET | ||
| SBS | Chr9 | 21122817 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g36610 |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 6624137 | 6624145 | 8 | |
| Deletion | Chr10 | 14213580 | 14213581 | 1 | |
| Deletion | Chr11 | 14582921 | 14582925 | 4 | |
| Deletion | Chr3 | 17071453 | 17071456 | 3 | |
| Deletion | Chr12 | 19139352 | 19139353 | 1 | LOC_Os12g31810 |
| Deletion | Chr8 | 20220904 | 20220905 | 1 | LOC_Os08g32650 |
| Deletion | Chr1 | 21826515 | 21826518 | 3 |
Insertions: 8
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 23362212 | 24191588 | LOC_Os11g39230 |
| Inversion | Chr11 | 23362248 | 24191589 | LOC_Os11g39230 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1188864 | Chr4 | 18475167 | |
| Translocation | Chr10 | 3068612 | Chr6 | 7733067 | |
| Translocation | Chr10 | 3068622 | Chr6 | 7732793 | |
| Translocation | Chr12 | 8566889 | Chr10 | 2106336 | |
| Translocation | Chr12 | 10628773 | Chr6 | 17675288 | LOC_Os12g18374 |
| Translocation | Chr5 | 15650385 | Chr4 | 19014537 | |
| Translocation | Chr5 | 15771760 | Chr4 | 19010719 | LOC_Os05g27100 |
| Translocation | Chr12 | 18869212 | Chr1 | 41200942 |