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| Mutant Information |
|---|
| Mutant Name | FN2352 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2352 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15555166 | G-A | Homo | ||
| SBS | Chr1 | 22158244 | G-A | Homo | ||
| SBS | Chr10 | 18836218 | A-T | Homo | ||
| SBS | Chr11 | 23822340 | G-A | HET | ||
| SBS | Chr11 | 23822342 | G-A | HET | ||
| SBS | Chr2 | 14722502 | G-A | HET | ||
| SBS | Chr2 | 31601466 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g51600 |
| SBS | Chr3 | 12770931 | C-A | HET | ||
| SBS | Chr3 | 16205268 | A-G | HET | ||
| SBS | Chr3 | 18629220 | G-A | HET | ||
| SBS | Chr3 | 18650528 | G-A | HET | ||
| SBS | Chr3 | 24278712 | T-A | HET | ||
| SBS | Chr3 | 4161254 | G-T | HET | ||
| SBS | Chr4 | 3467478 | T-C | Homo | ||
| SBS | Chr5 | 11812580 | T-C | HET | ||
| SBS | Chr5 | 619011 | C-G | Homo | ||
| SBS | Chr6 | 11994435 | T-C | HET | ||
| SBS | Chr6 | 29524171 | T-G | HET | ||
| SBS | Chr6 | 8431632 | T-A | HET | ||
| SBS | Chr6 | 8431633 | G-A | HET | ||
| SBS | Chr7 | 10552456 | A-T | Homo | ||
| SBS | Chr7 | 28162763 | G-A | HET | ||
| SBS | Chr7 | 28162764 | G-A | HET | ||
| SBS | Chr8 | 17107235 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g28060 |
| SBS | Chr9 | 17131243 | A-C | HET | ||
| SBS | Chr9 | 4277687 | G-A | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1102001 | 1246000 | 143999 | 26 |
| Deletion | Chr6 | 1270001 | 1325000 | 54999 | 14 |
| Deletion | Chr6 | 1333001 | 1355000 | 21999 | 4 |
| Deletion | Chr7 | 4976284 | 4976286 | 2 | |
| Deletion | Chr8 | 5109169 | 5109171 | 2 | |
| Deletion | Chr10 | 11504001 | 11515000 | 10999 | 3 |
| Deletion | Chr10 | 11578001 | 11628000 | 49999 | 6 |
| Deletion | Chr12 | 13808056 | 13808057 | 1 | LOC_Os12g24230 |
| Deletion | Chr9 | 16121762 | 16121767 | 5 | |
| Deletion | Chr3 | 21037862 | 21037865 | 3 | LOC_Os03g37878 |
| Deletion | Chr8 | 21834436 | 21834456 | 20 | |
| Deletion | Chr8 | 23380383 | 23380384 | 1 | |
| Deletion | Chr3 | 35421196 | 35421208 | 12 | |
| Deletion | Chr1 | 41692481 | 41692487 | 6 | LOC_Os01g71960 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 8667874 | 8667874 | 1 | |
| Insertion | Chr12 | 15228442 | 15228455 | 14 | LOC_Os12g26140 |
| Insertion | Chr5 | 2697098 | 2697099 | 2 | |
| Insertion | Chr7 | 9892461 | 9892461 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 11309675 | 11650417 | 2 |
| Inversion | Chr10 | 11309684 | 11630301 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 16458254 | Chr1 | 26987410 | 2 |
| Translocation | Chr12 | 18690628 | Chr5 | 6214999 |