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Mutant Information

Mutant NameFN2354 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2354 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 38
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr113498880C-THETNON_SYNONYMOUS_CODINGLOC_Os01g23980
SBSChr114094981T-AHomo
SBSChr125253872A-CHET
SBSChr141359580C-AHomo
SBSChr1015065587G-AHET
SBSChr105869113G-AHET
SBSChr106021887T-AHET
SBSChr107049539C-THET
SBSChr111736118T-AHomo
SBSChr119477912A-THET
SBSChr1224466309A-THomo
SBSChr314230405G-CHET
SBSChr323134058A-GHET
SBSChr324950322G-AHET
SBSChr334859536T-CHET
SBSChr335716051C-THET
SBSChr35425916C-THomo
SBSChr39239304G-CHET
SBSChr425336277C-THETNON_SYNONYMOUS_CODINGLOC_Os04g42784
SBSChr4295607T-CHomo
SBSChr49003498A-THET
SBSChr510689545G-AHETNON_SYNONYMOUS_CODINGLOC_Os05g18490
SBSChr623089254G-THET
SBSChr623089255A-GHET
SBSChr710403039A-THET
SBSChr711695767C-AHET
SBSChr713169005G-THET
SBSChr78680711C-AHET
SBSChr793174G-CHET
SBSChr81341588T-GHETNON_SYNONYMOUS_CODINGLOC_Os08g03020
SBSChr815901698A-GHET
SBSChr82112546C-AHET
SBSChr82116439G-CHET
SBSChr823301610G-AHET
SBSChr915577718C-THET
SBSChr93950756C-GHET
SBSChr95678415A-THET
SBSChr95769255T-GHET

Deletions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr11397497639749837
DeletionChr11580338258033897
DeletionChr460880016128000399994
DeletionChr1181860011843800025199935
DeletionChr41889300118926000329992
DeletionChr1020859327208593303
DeletionChr1127746751277467521
DeletionChr529373230293732311
DeletionChr231254030312540355
DeletionChr134930694349306951

Insertions: 5
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1125513290255132923
InsertionChr1221247509212475102
InsertionChr3136804413680441LOC_Os03g03210image
InsertionChr727523034275230363
InsertionChr8713023971302391

Inversions: 3
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr460289946086718LOC_Os04g11080
InversionChr114089012145635442
InversionChr114089029145637422

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr122047788Chr441201562
TranslocationChr33604336Chr216646902
TranslocationChr124464386Chr628669430
TranslocationChr1224881325Chr5147347312
TranslocationChr826718678Chr331563890
TranslocationChr1126898034Chr821593383