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Mutant Information |
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Mutant Name | FN2354 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2354 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 38
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 13498880 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g23980 |
SBS | Chr1 | 14094981 | T-A | Homo | ||
SBS | Chr1 | 25253872 | A-C | HET | ||
SBS | Chr1 | 41359580 | C-A | Homo | ||
SBS | Chr10 | 15065587 | G-A | HET | ||
SBS | Chr10 | 5869113 | G-A | HET | ||
SBS | Chr10 | 6021887 | T-A | HET | ||
SBS | Chr10 | 7049539 | C-T | HET | ||
SBS | Chr11 | 1736118 | T-A | Homo | ||
SBS | Chr11 | 9477912 | A-T | HET | ||
SBS | Chr12 | 24466309 | A-T | Homo | ||
SBS | Chr3 | 14230405 | G-C | HET | ||
SBS | Chr3 | 23134058 | A-G | HET | ||
SBS | Chr3 | 24950322 | G-A | HET | ||
SBS | Chr3 | 34859536 | T-C | HET | ||
SBS | Chr3 | 35716051 | C-T | HET | ||
SBS | Chr3 | 5425916 | C-T | Homo | ||
SBS | Chr3 | 9239304 | G-C | HET | ||
SBS | Chr4 | 25336277 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g42784 |
SBS | Chr4 | 295607 | T-C | Homo | ||
SBS | Chr4 | 9003498 | A-T | HET | ||
SBS | Chr5 | 10689545 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g18490 |
SBS | Chr6 | 23089254 | G-T | HET | ||
SBS | Chr6 | 23089255 | A-G | HET | ||
SBS | Chr7 | 10403039 | A-T | HET | ||
SBS | Chr7 | 11695767 | C-A | HET | ||
SBS | Chr7 | 13169005 | G-T | HET | ||
SBS | Chr7 | 8680711 | C-A | HET | ||
SBS | Chr7 | 93174 | G-C | HET | ||
SBS | Chr8 | 1341588 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g03020 |
SBS | Chr8 | 15901698 | A-G | HET | ||
SBS | Chr8 | 2112546 | C-A | HET | ||
SBS | Chr8 | 2116439 | G-C | HET | ||
SBS | Chr8 | 23301610 | G-A | HET | ||
SBS | Chr9 | 15577718 | C-T | HET | ||
SBS | Chr9 | 3950756 | C-G | HET | ||
SBS | Chr9 | 5678415 | A-T | HET | ||
SBS | Chr9 | 5769255 | T-G | HET |
Deletions: 10
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 25513290 | 25513292 | 3 | |
Insertion | Chr12 | 21247509 | 21247510 | 2 | |
Insertion | Chr3 | 1368044 | 1368044 | 1 | LOC_Os03g03210![]() |
Insertion | Chr7 | 27523034 | 27523036 | 3 | |
Insertion | Chr8 | 7130239 | 7130239 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 6028994 | 6086718 | LOC_Os04g11080 |
Inversion | Chr1 | 14089012 | 14563544 | 2 |
Inversion | Chr1 | 14089029 | 14563742 | 2 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 2047788 | Chr4 | 4120156 | 2 |
Translocation | Chr3 | 3604336 | Chr2 | 16646902 | |
Translocation | Chr12 | 4464386 | Chr6 | 28669430 | |
Translocation | Chr12 | 24881325 | Chr5 | 14734731 | 2 |
Translocation | Chr8 | 26718678 | Chr3 | 31563890 | |
Translocation | Chr11 | 26898034 | Chr8 | 21593383 |