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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.
Mutant NameFN2355 [Download]
GenerationM2-SOS
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2355 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 24
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr110740563G-AHET
SBSChr123550202A-GHET
SBSChr124444925A-GHET
SBSChr12960789A-GHET
SBSChr16174666T-GHET
SBSChr17066296T-CHomo
SBSChr1222723396A-CHET
SBSChr12792336C-THET
SBSChr234392673C-THomo
SBSChr31203303T-AHET
SBSChr316961039A-THomo
SBSChr322842273G-THomo
SBSChr323906317C-AHET
SBSChr330977451G-AHET
SBSChr511555112G-THET
SBSChr520149861C-GHET
SBSChr52113662T-GHET
SBSChr52757370A-CHET
SBSChr714049193G-AHET
SBSChr714883531A-THET
SBSChr719170253T-CHETNON_SYNONYMOUS_CODINGLOC_Os07g32250
SBSChr819851965C-THomo
SBSChr82745130G-THomo
SBSChr96752396T-GHET

Deletions: 13
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr67182647182651
DeletionChr11912297691229804
DeletionChr311659702116597031
DeletionChr1013687951136879521LOC_Os10g26370
DeletionChr3144844171448443215
DeletionChr121520200115253000509994
DeletionChr12153890011567600028699937
DeletionChr12167711711677119322
DeletionChr12195996421959965210
DeletionChr219855113198551141
DeletionChr723738993237390007
DeletionChr4246935172469353619
DeletionChr131719934317199362

Insertions: 4
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr10767365176736511
InsertionChr220509365205093662
InsertionChr514040336140403372
InsertionChr723887239238872424

Inversions: 5
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr148346624878513
InversionChr148346714878529
InversionChr71786633117947392
InversionChr71786633817947395
InversionChr625090718256471602

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr41967743Chr234591374LOC_Os04g04220
TranslocationChr55212063Chr1194836862
TranslocationChr75606804Chr18155925
TranslocationChr126015144Chr87185780
TranslocationChr67521744Chr3253429522
TranslocationChr1224160403Chr384135872