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Mutant Information |
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Mutant Name | FN2355 [Download] |
Generation | M2-SOS |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2355 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 24
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 10740563 | G-A | HET | ||
SBS | Chr1 | 23550202 | A-G | HET | ||
SBS | Chr1 | 24444925 | A-G | HET | ||
SBS | Chr1 | 2960789 | A-G | HET | ||
SBS | Chr1 | 6174666 | T-G | HET | ||
SBS | Chr1 | 7066296 | T-C | Homo | ||
SBS | Chr12 | 22723396 | A-C | HET | ||
SBS | Chr12 | 792336 | C-T | HET | ||
SBS | Chr2 | 34392673 | C-T | Homo | ||
SBS | Chr3 | 1203303 | T-A | HET | ||
SBS | Chr3 | 16961039 | A-T | Homo | ||
SBS | Chr3 | 22842273 | G-T | Homo | ||
SBS | Chr3 | 23906317 | C-A | HET | ||
SBS | Chr3 | 30977451 | G-A | HET | ||
SBS | Chr5 | 11555112 | G-T | HET | ||
SBS | Chr5 | 20149861 | C-G | HET | ||
SBS | Chr5 | 2113662 | T-G | HET | ||
SBS | Chr5 | 2757370 | A-C | HET | ||
SBS | Chr7 | 14049193 | G-A | HET | ||
SBS | Chr7 | 14883531 | A-T | HET | ||
SBS | Chr7 | 19170253 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g32250 |
SBS | Chr8 | 19851965 | C-T | Homo | ||
SBS | Chr8 | 2745130 | G-T | Homo | ||
SBS | Chr9 | 6752396 | T-G | HET |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 718264 | 718265 | 1 | |
Deletion | Chr11 | 9122976 | 9122980 | 4 | |
Deletion | Chr3 | 11659702 | 11659703 | 1 | |
Deletion | Chr10 | 13687951 | 13687952 | 1 | LOC_Os10g26370 |
Deletion | Chr3 | 14484417 | 14484432 | 15 | |
Deletion | Chr12 | 15202001 | 15253000 | 50999 | 4 |
Deletion | Chr12 | 15389001 | 15676000 | 286999 | 37 |
Deletion | Chr12 | 16771171 | 16771193 | 22 | |
Deletion | Chr12 | 19599642 | 19599652 | 10 | |
Deletion | Chr2 | 19855113 | 19855114 | 1 | |
Deletion | Chr7 | 23738993 | 23739000 | 7 | |
Deletion | Chr4 | 24693517 | 24693536 | 19 | |
Deletion | Chr1 | 31719934 | 31719936 | 2 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 7673651 | 7673651 | 1 | |
Insertion | Chr2 | 20509365 | 20509366 | 2 | |
Insertion | Chr5 | 14040336 | 14040337 | 2 | |
Insertion | Chr7 | 23887239 | 23887242 | 4 |
Inversions: 5
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr4 | 1967743 | Chr2 | 34591374 | LOC_Os04g04220 |
Translocation | Chr5 | 5212063 | Chr1 | 19483686 | 2 |
Translocation | Chr7 | 5606804 | Chr1 | 8155925 | |
Translocation | Chr12 | 6015144 | Chr8 | 7185780 | |
Translocation | Chr6 | 7521744 | Chr3 | 25342952 | 2 |
Translocation | Chr12 | 24160403 | Chr3 | 8413587 | 2 |