Search Results
| Mutant Information |
|---|
| Mutant Name | FN2356 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2356 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30567647 | T-G | Homo | ||
| SBS | Chr1 | 42977856 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g74190 |
| SBS | Chr2 | 7211580 | A-T | Homo | ||
| SBS | Chr2 | 17927671 | C-T | HET | ||
| SBS | Chr3 | 35527131 | C-T | HET | ||
| SBS | Chr4 | 8380325 | A-G | HET | ||
| SBS | Chr4 | 8380326 | G-T | HET | ||
| SBS | Chr4 | 8380327 | C-T | HET | ||
| SBS | Chr4 | 24296574 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g40930 |
| SBS | Chr4 | 25957360 | G-A | Homo | ||
| SBS | Chr4 | 33944056 | C-T | Homo | ||
| SBS | Chr5 | 6001621 | C-T | HET | ||
| SBS | Chr5 | 6001622 | C-A | HET | ||
| SBS | Chr5 | 15947076 | C-T | HET | ||
| SBS | Chr6 | 2623557 | G-A | HET | ||
| SBS | Chr6 | 13924645 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g23820 |
| SBS | Chr7 | 7277729 | T-C | HET | ||
| SBS | Chr7 | 10601364 | C-T | HET | ||
| SBS | Chr7 | 14251586 | A-T | HET | ||
| SBS | Chr8 | 8443116 | G-A | Homo | ||
| SBS | Chr8 | 12736778 | C-T | Homo | ||
| SBS | Chr8 | 20611017 | G-T | HET | ||
| SBS | Chr10 | 1843996 | A-C | HET | ||
| SBS | Chr10 | 4987162 | T-C | Homo | ||
| SBS | Chr10 | 14026225 | C-T | HET | ||
| SBS | Chr10 | 18584902 | C-T | Homo | ||
| SBS | Chr11 | 9459651 | T-A | HET | ||
| SBS | Chr11 | 14771380 | G-A | HET | ||
| SBS | Chr11 | 27166451 | C-A | HET | ||
| SBS | Chr12 | 5809641 | A-G | Homo | ||
| SBS | Chr12 | 12465683 | C-T | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 70094 | 70101 | 7 | |
| Deletion | Chr2 | 2937952 | 2937955 | 3 | |
| Deletion | Chr10 | 4986590 | 4986613 | 23 | |
| Deletion | Chr6 | 5644777 | 5644778 | 1 | |
| Deletion | Chr11 | 7319103 | 7319108 | 5 | |
| Deletion | Chr10 | 7411300 | 7411307 | 7 | |
| Deletion | Chr6 | 8036353 | 8036361 | 8 | |
| Deletion | Chr4 | 8393785 | 8393792 | 7 | |
| Deletion | Chr1 | 19424977 | 19424979 | 2 | LOC_Os01g35080 |
| Deletion | Chr1 | 20786068 | 20786078 | 10 | |
| Deletion | Chr11 | 23873225 | 23873226 | 1 | |
| Deletion | Chr12 | 25870118 | 25870120 | 2 | |
| Deletion | Chr3 | 28080690 | 28080703 | 13 | |
| Deletion | Chr11 | 28664914 | 28664915 | 1 | |
| Deletion | Chr4 | 31273074 | 31273086 | 12 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 34110165 | 34110166 | 2 | |
| Insertion | Chr2 | 25554625 | 25554686 | 62 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 362756 | 518196 | LOC_Os03g01580 |
| Inversion | Chr3 | 362774 | 536790 | LOC_Os03g01580 |
Translocations: 35
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 515295 | Chr5 | 10473526 | LOC_Os11g01960 |
| Translocation | Chr6 | 1224682 | Chr4 | 27248223 | |
| Translocation | Chr4 | 2531569 | Chr3 | 24316276 | 2 |
| Translocation | Chr11 | 4160652 | Chr8 | 8454867 | LOC_Os11g08000 |
| Translocation | Chr8 | 4713417 | Chr1 | 28394490 | LOC_Os08g08240 |
| Translocation | Chr7 | 7220104 | Chr1 | 23827306 | 2 |
| Translocation | Chr11 | 8006265 | Chr7 | 18153636 | |
| Translocation | Chr12 | 8006706 | Chr1 | 11768748 | |
| Translocation | Chr8 | 8145547 | Chr5 | 29485412 | |
| Translocation | Chr8 | 8145588 | Chr5 | 29485498 | |
| Translocation | Chr7 | 8964219 | Chr2 | 24244989 | |
| Translocation | Chr8 | 9914650 | Chr5 | 25980756 | LOC_Os08g16250 |
| Translocation | Chr12 | 10043706 | Chr9 | 9544628 | 2 |
| Translocation | Chr8 | 10395362 | Chr1 | 31269249 | |
| Translocation | Chr12 | 11163534 | Chr4 | 2115421 | LOC_Os12g19250 |
| Translocation | Chr4 | 11231228 | Chr3 | 4244408 | |
| Translocation | Chr10 | 12025660 | Chr9 | 9357191 | |
| Translocation | Chr11 | 13148121 | Chr9 | 3412520 | 2 |
| Translocation | Chr11 | 14077060 | Chr10 | 13975170 | |
| Translocation | Chr8 | 17299160 | Chr4 | 18885956 | LOC_Os08g28350 |
| Translocation | Chr11 | 18032530 | Chr5 | 14981937 | 2 |
| Translocation | Chr9 | 19929206 | Chr4 | 26648747 | 2 |
| Translocation | Chr11 | 20513115 | Chr8 | 4442062 | 2 |
| Translocation | Chr8 | 20533831 | Chr4 | 7877667 | LOC_Os08g33050 |
| Translocation | Chr8 | 20584385 | Chr6 | 1072416 | |
| Translocation | Chr11 | 20609678 | Chr6 | 13862356 | |
| Translocation | Chr9 | 21246712 | Chr2 | 18115022 | |
| Translocation | Chr12 | 21609253 | Chr3 | 17354358 | LOC_Os12g35540 |
| Translocation | Chr12 | 22172483 | Chr8 | 3235995 | |
| Translocation | Chr12 | 22800132 | Chr8 | 17299284 | 2 |
| Translocation | Chr6 | 23251200 | Chr3 | 13645054 | LOC_Os06g39160 |
| Translocation | Chr11 | 26824661 | Chr10 | 9313826 | LOC_Os11g44370 |
| Translocation | Chr11 | 28270670 | Chr9 | 13425292 | 2 |
| Translocation | Chr11 | 28459676 | Chr1 | 16095148 | |
| Translocation | Chr4 | 28614278 | Chr3 | 1456364 |